RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 PLEKHS1Q5SXH7 462 aa16.07■□□□□ 0.16
CCDC28B-204ENST00000469003 PRAMEF17Q5VTA0 474 aa16.07■□□□□ 0.16
CCDC28B-204ENST00000469003 GAS2L3Q86XJ1 694 aa16.07■□□□□ 0.16
CCDC28B-204ENST00000469003 ADGRF3Q8IZF5 1079 aa16.07■□□□□ 0.16
CCDC28B-204ENST00000469003 RNF10Q8N5U6 811 aaKnown RBP16.07■□□□□ 0.16
CCDC28B-204ENST00000469003 OR52K1Q8NGK4 314 aa16.07■□□□□ 0.16
CCDC28B-204ENST00000469003 ATG4AQ8WYN0 398 aa16.07■□□□□ 0.16
CCDC28B-204ENST00000469003 TRAPPC9Q96Q05 1148 aa16.07■□□□□ 0.16
CCDC28B-204ENST00000469003 NRTNQ99748 197 aa16.07■□□□□ 0.16
CCDC28B-204ENST00000469003 FRMD8P1Q9BZ68 369 aaPredicted RBP16.07■□□□□ 0.16
CCDC28B-204ENST00000469003 CHST8Q9H2A9 424 aa16.07■□□□□ 0.16
CCDC28B-204ENST00000469003 PRSS21Q9Y6M0 314 aa16.07■□□□□ 0.16
CCDC28B-204ENST00000469003 NOTCH2Q04721 2471 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 NBASA2RRP1 2371 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 CCDC162PA2VCL2 907 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 OR51F1A6NGY5 319 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 MEN1O00255 615 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 GAS8O95995 478 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 FTH1P02794 183 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 RAB40ALP0C0E4 278 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 RORAP35398 523 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 FDFT1P37268 417 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 LMAN1P49257 510 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 PRKG2Q13237 762 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 IL10RAQ13651 578 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 OASLQ15646 514 aaKnown RBP16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 CCDC38Q502W7 563 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 ZNF789Q5FWF6 425 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 SEL1L2Q5TEA6 688 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 ASB18Q6ZVZ8 466 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 DNAAF3Q8N9W5 541 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 TEX19Q8NA77 164 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 OR1L3Q8NH93 324 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 ELMO1Q92556 727 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 TBRG4Q969Z0 631 aaKnown RBP eCLIP16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 CLIP3Q96DZ5 547 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 TRIM55Q9BYV6 548 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 XKR8Q9H6D3 395 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 ETNK1Q9HBU6 452 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 ACTR10Q9NZ32 417 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 ANKMY1Q9P2S6 941 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 SERTAD3Q9UJW9 196 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 ICKQ9UPZ9 632 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 UNC79Q9P2D8 2635 aa16.06■□□□□ 0.16
CCDC28B-204ENST00000469003 MYO9AB2RTY4 2548 aa16.05■□□□□ 0.16
CCDC28B-204ENST00000469003 HEATR9A2RTY3 570 aa16.05■□□□□ 0.16
CCDC28B-204ENST00000469003 LIASO43766 372 aa16.05■□□□□ 0.16
CCDC28B-204ENST00000469003 DNAJB5O75953 348 aa16.05■□□□□ 0.16
CCDC28B-204ENST00000469003 SUN1O94901 812 aa16.05■□□□□ 0.16
CCDC28B-204ENST00000469003 SPTBP11277 2137 aa16.05■□□□□ 0.16
CCDC28B-204ENST00000469003 PVRP15151 417 aa16.05■□□□□ 0.16
CCDC28B-204ENST00000469003 CYP2A7P20853 494 aa16.05■□□□□ 0.16
CCDC28B-204ENST00000469003 ACADLP28330 430 aa16.05■□□□□ 0.16
CCDC28B-204ENST00000469003 CDC25BP30305 580 aa16.05■□□□□ 0.16
CCDC28B-204ENST00000469003 SHMT2P34897 504 aa16.05■□□□□ 0.16
CCDC28B-204ENST00000469003 PLOD1Q02809 727 aaPredicted RBP16.05■□□□□ 0.16
CCDC28B-204ENST00000469003 IGFBP7Q16270 282 aa16.05■□□□□ 0.16
CCDC28B-204ENST00000469003 LYPLAL1Q5VWZ2 237 aa16.05■□□□□ 0.16
CCDC28B-204ENST00000469003 LCN10Q6JVE6 187 aa16.05■□□□□ 0.16
CCDC28B-204ENST00000469003 SPESP1Q6UW49 350 aa16.05■□□□□ 0.16
CCDC28B-204ENST00000469003 ENDOVQ8N8Q3 282 aaKnown RBP16.05■□□□□ 0.16
CCDC28B-204ENST00000469003 OR5AR1Q8NGP9 310 aa16.05■□□□□ 0.16
CCDC28B-204ENST00000469003 OR13J1Q8NGT2 312 aa16.05■□□□□ 0.16
CCDC28B-204ENST00000469003 UBE2Q2Q8WVN8 375 aa16.05■□□□□ 0.16
CCDC28B-204ENST00000469003 RANBP9Q96S59 729 aa16.05■□□□□ 0.16
CCDC28B-204ENST00000469003 NLNQ9BYT8 704 aa16.05■□□□□ 0.16
CCDC28B-204ENST00000469003 ACTR5Q9H9F9 607 aaPredicted RBP16.05■□□□□ 0.16
CCDC28B-204ENST00000469003 PCMTD2Q9NV79 361 aa16.05■□□□□ 0.16
CCDC28B-204ENST00000469003 POLG2Q9UHN1 485 aa16.05■□□□□ 0.16
CCDC28B-204ENST00000469003 RIMKLBQ9ULI2 386 aa16.05■□□□□ 0.16
CCDC28B-204ENST00000469003 ASF1AQ9Y294 204 aa16.05■□□□□ 0.16
CCDC28B-204ENST00000469003 SLC5A10A0PJK1 596 aa16.04■□□□□ 0.16
CCDC28B-204ENST00000469003 OR56A5P0C7T3 313 aa16.04■□□□□ 0.16
CCDC28B-204ENST00000469003 ITGA1P56199 1179 aa16.04■□□□□ 0.16
CCDC28B-204ENST00000469003 TSTD2Q5T7W7 516 aa16.04■□□□□ 0.16
CCDC28B-204ENST00000469003 CPZQ66K79 652 aa16.04■□□□□ 0.16
CCDC28B-204ENST00000469003 AFTPHQ6ULP2 937 aa16.04■□□□□ 0.16
CCDC28B-204ENST00000469003 PPP1R21Q6ZMI0 780 aa16.04■□□□□ 0.16
CCDC28B-204ENST00000469003 CDHR3Q6ZTQ4 885 aa16.04■□□□□ 0.16
CCDC28B-204ENST00000469003 HOOK3Q86VS8 718 aa16.04■□□□□ 0.16
CCDC28B-204ENST00000469003 SYTL1Q8IYJ3 562 aa16.04■□□□□ 0.16
CCDC28B-204ENST00000469003 TBC1D21Q8IYX1 336 aa16.04■□□□□ 0.16
CCDC28B-204ENST00000469003 SPC24Q8NBT2 197 aa16.04■□□□□ 0.16
CCDC28B-204ENST00000469003 ADAMTS17Q8TE56 1095 aa16.04■□□□□ 0.16
CCDC28B-204ENST00000469003 HDAC10Q969S8 669 aa16.04■□□□□ 0.16
CCDC28B-204ENST00000469003 TTC1Q99614 292 aa16.04■□□□□ 0.16
CCDC28B-204ENST00000469003 KLHL25Q9H0H3 589 aa16.04■□□□□ 0.16
CCDC28B-204ENST00000469003 BHMG1C9JSJ3 638 aaPredicted RBP16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 E7EQ34 232 aa16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 E7EVH7 732 aa16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 F8W8V4 182 aa16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 GOT2P00505 430 aaKnown RBP16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 IFNB1P01574 187 aa16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 PDGFAP04085 211 aa16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 CAPN1P07384 714 aa16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 HBQ1P09105 142 aa16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 ADRA1DP25100 572 aa16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 ACVR1Q04771 509 aa16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 BRD3Q15059 726 aa16.03■□□□□ 0.16
CCDC28B-204ENST00000469003 SYTL3Q4VX76 610 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms