RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 GRHL1Q9NZI5 618 aa11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 ERRFI1Q9UJM3 462 aaPredicted RBP11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 PCDHB3Q9Y5E6 796 aa11.65□□□□□ -0.54
SQSTM1-206ENST00000466342 IGLV3-16A0A075B6K0 115 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 IGHV1OR21-1A0A087WYE8 117 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 OR5K4A6NMS3 321 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 B4E171 279 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 KMOO15229 486 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 USP1O94782 785 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 PRSS56P0CW18 603 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 RALBP11234 206 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 SLC2A4P14672 509 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 MSH3P20585 1137 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 ARNTP27540 789 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 DEKP35659 375 aaKnown RBP11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 TSPAN7P41732 249 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 DRG2P55039 364 aaKnown RBP11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 ARL4CP56559 192 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 RAB15P59190 212 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 BBS9Q3SYG4 887 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 ANKRD20A4Q4UJ75 823 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 MSS51Q4VC12 460 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 FASTKD1Q53R41 847 aaKnown RBP11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 LYPLAL1Q5VWZ2 237 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 ANKS6Q68DC2 871 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 KIAA0930Q6ICG6 404 aaPredicted RBP11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 IYDQ6PHW0 289 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 CRTC3Q6UUV7 619 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 CERS6Q6ZMG9 384 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 TAS2R42Q7RTR8 314 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 LRRTM4Q86VH4 590 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 TRAPPC5Q8IUR0 188 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 ZNF547Q8IVP9 402 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 PIANPQ8IYJ0 282 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 RASGEF1AQ8N9B8 481 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 OR4D9Q8NGE8 314 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 OR6P1Q8NGX9 317 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 SLC37A2Q8TED4 501 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 HEXDCQ8WVB3 486 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 SH3KBP1Q96B97 665 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 ZNF669Q96BR6 464 aaPredicted RBP11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 STAMBPL1Q96FJ0 436 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 DCUN1D1Q96GG9 259 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 TCTN2Q96GX1 697 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 COPS8Q99627 209 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 TRIM56Q9BRZ2 755 aaKnown RBP11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 CARD6Q9BX69 1037 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 TRIT1Q9H3H1 467 aaKnown RBP11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 TLK1Q9UKI8 766 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 PRKAB1Q9Y478 270 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 MAD1L1Q9Y6D9 718 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 RPS6KL1Q9Y6S9 549 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 NF1P21359 2839 aa11.64□□□□□ -0.55
SQSTM1-206ENST00000466342 KIR2DS5A0A0G2JLQ3 304 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 A0A0G2JNG1 304 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 ZCWPW2A0A1B0GU75 182 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 OR2AG2A6NM03 316 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 TCP11X1B4DZS4 312 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 CFAP99D6REC4 459 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 KIR2DS3K7RE56 304 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 BANF1O75531 89 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 RFPL1O75677 317 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 VAPBO95292 243 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 PDGFAP04085 211 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 ACP5P13686 325 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 F3P13726 295 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 ATP1B2P14415 290 aaPredicted RBP11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 PGAM1P18669 254 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 CTSCP53634 463 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 SLC7A5Q01650 507 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 CAV1Q03135 178 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 CBLBQ13191 982 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 MRPL49Q13405 166 aaKnown RBP11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 SEMA3AQ14563 771 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 ITIH4Q14624 930 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 NAA30Q147X3 362 aaPredicted RBP11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 KIR2DS5Q14953 304 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 DBN1Q16643 649 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 GLE1Q53GS7 698 aaKnown RBP11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 AARS2Q5JTZ9 985 aaKnown RBP11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 DNTTIP2Q5QJE6 756 aaKnown RBP11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 CHCHD2P9Q5T1J5 151 aaPredicted RBP11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 TMEM71Q6P5X7 295 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 PACS1Q6VY07 963 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 AVL9Q8NBF6 648 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 SEC14L1Q92503 715 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 LRRC39Q96DD0 335 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 ZNF514Q96K75 400 aaPredicted RBP11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 PWWP2AQ96N64 755 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 TTC1Q99614 292 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 SLC38A3Q99624 504 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 EBNA1BP2Q99848 306 aaKnown RBP11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 TIMM29Q9BSF4 260 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 NAT9Q9BTE0 207 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 STN1Q9H668 368 aaKnown RBP11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 L2HGDHQ9H9P8 463 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 SARS2Q9NP81 518 aaKnown RBP11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 CATSPERZQ9NTU4 200 aa11.63□□□□□ -0.55
SQSTM1-206ENST00000466342 PDP2Q9P2J9 529 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms