RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 TARDBPQ13148 414 aaKnown RBP eCLIP19.27■□□□□ 0.68
COL9A3-204ENST00000463487 TRA2AQ13595 282 aaKnown RBP eCLIP19.27■□□□□ 0.68
COL9A3-204ENST00000463487 GBX1Q14549 363 aa19.27■□□□□ 0.68
COL9A3-204ENST00000463487 ISXQ2M1V0 245 aa19.27■□□□□ 0.68
COL9A3-204ENST00000463487 KLHL38Q2WGJ6 581 aa19.27■□□□□ 0.68
COL9A3-204ENST00000463487 PHF19Q5T6S3 580 aa19.27■□□□□ 0.68
COL9A3-204ENST00000463487 NKAIN2Q5VXU1 208 aa19.27■□□□□ 0.68
COL9A3-204ENST00000463487 TMEM71Q6P5X7 295 aa19.27■□□□□ 0.68
COL9A3-204ENST00000463487 PHC3Q8NDX5 983 aa19.27■□□□□ 0.68
COL9A3-204ENST00000463487 OR5AR1Q8NGP9 310 aa19.27■□□□□ 0.68
COL9A3-204ENST00000463487 CD200R1Q8TD46 325 aa19.27■□□□□ 0.68
COL9A3-204ENST00000463487 TSPAN17Q96FV3 270 aa19.27■□□□□ 0.68
COL9A3-204ENST00000463487 ZDHHC12Q96GR4 267 aa19.27■□□□□ 0.68
COL9A3-204ENST00000463487 NUDT22Q9BRQ3 303 aa19.27■□□□□ 0.68
COL9A3-204ENST00000463487 RAB11FIP5Q9BXF6 653 aa19.27■□□□□ 0.68
COL9A3-204ENST00000463487 SRMSQ9H3Y6 488 aa19.27■□□□□ 0.68
COL9A3-204ENST00000463487 TFB2MQ9H5Q4 396 aaKnown RBP19.27■□□□□ 0.68
COL9A3-204ENST00000463487 TDRKHQ9Y2W6 561 aaKnown RBP19.27■□□□□ 0.68
COL9A3-204ENST00000463487 A0A087WUV0 522 aaPredicted RBP19.26■□□□□ 0.67
COL9A3-204ENST00000463487 PRAMEF33A0A0G2JMD5 474 aa19.26■□□□□ 0.67
COL9A3-204ENST00000463487 MED19A0JLT2 244 aaPredicted RBP19.26■□□□□ 0.67
COL9A3-204ENST00000463487 CXorf49A8MYA2 514 aaPredicted RBP19.26■□□□□ 0.67
COL9A3-204ENST00000463487 CATP04040 527 aaKnown RBP19.26■□□□□ 0.67
COL9A3-204ENST00000463487 MPC1LP0DKB6 136 aa19.26■□□□□ 0.67
COL9A3-204ENST00000463487 CCKBRP32239 447 aa19.26■□□□□ 0.67
COL9A3-204ENST00000463487 ABCG1P45844 678 aa19.26■□□□□ 0.67
COL9A3-204ENST00000463487 IL2P60568 153 aa19.26■□□□□ 0.67
COL9A3-204ENST00000463487 POU4F1Q01851 419 aa19.26■□□□□ 0.67
COL9A3-204ENST00000463487 PRKG2Q13237 762 aa19.26■□□□□ 0.67
COL9A3-204ENST00000463487 ACSBG2Q5FVE4 666 aa19.26■□□□□ 0.67
COL9A3-204ENST00000463487 RBM20Q5T481 1227 aaKnown RBP19.26■□□□□ 0.67
COL9A3-204ENST00000463487 MYO1HQ8N1T3 1032 aa19.26■□□□□ 0.67
COL9A3-204ENST00000463487 OR52E1Q8NGJ3 308 aa19.26■□□□□ 0.67
COL9A3-204ENST00000463487 RAD51AP1Q96B01 352 aa19.26■□□□□ 0.67
COL9A3-204ENST00000463487 RBBP8Q99708 897 aa19.26■□□□□ 0.67
COL9A3-204ENST00000463487 RAB33BQ9H082 229 aa19.26■□□□□ 0.67
COL9A3-204ENST00000463487 ACSS3Q9H6R3 686 aa19.26■□□□□ 0.67
COL9A3-204ENST00000463487 SMYD2Q9NRG4 433 aa19.26■□□□□ 0.67
COL9A3-204ENST00000463487 MSRB2Q9Y3D2 182 aa19.26■□□□□ 0.67
COL9A3-204ENST00000463487 UNC13CQ8NB66 2214 aa19.25■□□□□ 0.67
COL9A3-204ENST00000463487 SPTBN2O15020 2390 aa19.25■□□□□ 0.67
COL9A3-204ENST00000463487 FAM149AA5PLN7 773 aa19.25■□□□□ 0.67
COL9A3-204ENST00000463487 PABPN1LA6NDY0 278 aaKnown RBP19.25■□□□□ 0.67
COL9A3-204ENST00000463487 SAT1P21673 171 aa19.25■□□□□ 0.67
COL9A3-204ENST00000463487 FDXRP22570 491 aa19.25■□□□□ 0.67
COL9A3-204ENST00000463487 MAP4P27816 1152 aaKnown RBP19.25■□□□□ 0.67
COL9A3-204ENST00000463487 LIMK2P53671 638 aa19.25■□□□□ 0.67
COL9A3-204ENST00000463487 PMS2P54278 862 aa19.25■□□□□ 0.67
COL9A3-204ENST00000463487 CDKN2DP55273 166 aa19.25■□□□□ 0.67
COL9A3-204ENST00000463487 EIF3IQ13347 325 aaKnown RBP19.25■□□□□ 0.67
COL9A3-204ENST00000463487 CCNI2Q6ZMN8 369 aaPredicted RBP19.25■□□□□ 0.67
COL9A3-204ENST00000463487 TAOK1Q7L7X3 1001 aa19.25■□□□□ 0.67
COL9A3-204ENST00000463487 AMIGO1Q86WK6 493 aa19.25■□□□□ 0.67
COL9A3-204ENST00000463487 CPNE9Q8IYJ1 553 aa19.25■□□□□ 0.67
COL9A3-204ENST00000463487 CNPY4Q8N129 248 aa19.25■□□□□ 0.67
COL9A3-204ENST00000463487 OR4E2Q8NGC2 313 aa19.25■□□□□ 0.67
COL9A3-204ENST00000463487 GIMAP7Q8NHV1 300 aa19.25■□□□□ 0.67
COL9A3-204ENST00000463487 POPDC3Q9HBV1 291 aa19.25■□□□□ 0.67
COL9A3-204ENST00000463487 SYTL2Q9HCH5 934 aa19.25■□□□□ 0.67
COL9A3-204ENST00000463487 GALPQ9UBC7 116 aa19.25■□□□□ 0.67
COL9A3-204ENST00000463487 EPHA6Q9UF33 1036 aa19.25■□□□□ 0.67
COL9A3-204ENST00000463487 TSR3Q9UJK0 312 aaKnown RBP19.25■□□□□ 0.67
COL9A3-204ENST00000463487 KLK13Q9UKR3 277 aa19.25■□□□□ 0.67
COL9A3-204ENST00000463487 SLC39A10Q9ULF5 831 aa19.25■□□□□ 0.67
COL9A3-204ENST00000463487 MED16Q9Y2X0 877 aa19.25■□□□□ 0.67
COL9A3-204ENST00000463487 MN1Q10571 1320 aaPredicted RBP19.25■□□□□ 0.67
COL9A3-204ENST00000463487 CCDC187A0A096LP49 1063 aa19.24■□□□□ 0.67
COL9A3-204ENST00000463487 OR6C74A6NCV1 312 aa19.24■□□□□ 0.67
COL9A3-204ENST00000463487 MATN4O95460 622 aa19.24■□□□□ 0.67
COL9A3-204ENST00000463487 ABHD2P08910 425 aa19.24■□□□□ 0.67
COL9A3-204ENST00000463487 CSF2RBP32927 897 aa19.24■□□□□ 0.67
COL9A3-204ENST00000463487 CLDN6P56747 220 aa19.24■□□□□ 0.67
COL9A3-204ENST00000463487 RSC1A1Q92681 617 aa19.24■□□□□ 0.67
COL9A3-204ENST00000463487 LIN37Q96GY3 246 aaPredicted RBP19.24■□□□□ 0.67
COL9A3-204ENST00000463487 CD180Q99467 661 aa19.24■□□□□ 0.67
COL9A3-204ENST00000463487 GPR22Q99680 433 aa19.24■□□□□ 0.67
COL9A3-204ENST00000463487 SLC30A3Q99726 388 aa19.24■□□□□ 0.67
COL9A3-204ENST00000463487 CMKLR1Q99788 373 aa19.24■□□□□ 0.67
COL9A3-204ENST00000463487 FUT8Q9BYC5 575 aa19.24■□□□□ 0.67
COL9A3-204ENST00000463487 ANKZF1Q9H8Y5 726 aa19.24■□□□□ 0.67
COL9A3-204ENST00000463487 HRASLS2Q9NWW9 162 aa19.24■□□□□ 0.67
COL9A3-204ENST00000463487 OR6C2Q9NZP2 312 aa19.24■□□□□ 0.67
COL9A3-204ENST00000463487 WASF3Q9UPY6 502 aa19.24■□□□□ 0.67
COL9A3-204ENST00000463487 ENTPD2Q9Y5L3 495 aa19.24■□□□□ 0.67
COL9A3-204ENST00000463487 PTPRBP23467 1997 aa19.24■□□□□ 0.67
COL9A3-204ENST00000463487 CACNA1AO00555 2505 aa19.23■□□□□ 0.67
COL9A3-204ENST00000463487 IGHV5-10-1A0A0J9YXX1 117 aa19.23■□□□□ 0.67
COL9A3-204ENST00000463487 OR5K3A6NET4 321 aa19.23■□□□□ 0.67
COL9A3-204ENST00000463487 HGSO14964 777 aaPredicted RBP19.23■□□□□ 0.67
COL9A3-204ENST00000463487 TOX3O15405 576 aaPredicted RBP19.23■□□□□ 0.67
COL9A3-204ENST00000463487 CAPN5O15484 640 aaPredicted RBP19.23■□□□□ 0.67
COL9A3-204ENST00000463487 ZBTB14O43829 449 aa19.23■□□□□ 0.67
COL9A3-204ENST00000463487 PIAS1O75925 651 aa19.23■□□□□ 0.67
COL9A3-204ENST00000463487 C1orf105O95561 183 aa19.23■□□□□ 0.67
COL9A3-204ENST00000463487 TUBBP07437 444 aa19.23■□□□□ 0.67
COL9A3-204ENST00000463487 INHBAP08476 426 aa19.23■□□□□ 0.67
COL9A3-204ENST00000463487 STMN1P16949 149 aa19.23■□□□□ 0.67
COL9A3-204ENST00000463487 ZFP36L1Q07352 338 aaKnown RBP19.23■□□□□ 0.67
COL9A3-204ENST00000463487 USP10Q14694 798 aaKnown RBP19.23■□□□□ 0.67
COL9A3-204ENST00000463487 UAP1Q16222 522 aaPredicted RBP19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms