RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 ALG9Q9H6U8 611 aa6.1□□□□□ -1.43
VPS13D-202ENST00000460333 KCNE2Q9Y6J6 123 aa6.1□□□□□ -1.43
VPS13D-202ENST00000460333 MGAT4DA6NG13 374 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 SLC9A3R1O14745 358 aaPredicted RBP6.09□□□□□ -1.43
VPS13D-202ENST00000460333 MATN3O15232 486 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 CXCL14O95715 111 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 T-ENOLP0DO92 83 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 HAPLN1P10915 354 aaPredicted RBP6.09□□□□□ -1.43
VPS13D-202ENST00000460333 PAICSP22234 425 aaKnown RBP6.09□□□□□ -1.43
VPS13D-202ENST00000460333 HPCAL1P37235 193 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 CTSKP43235 329 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 PPP5CP53041 499 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 VBP1P61758 197 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 TXNL4AP83876 142 aaKnown RBP6.09□□□□□ -1.43
VPS13D-202ENST00000460333 GALNT2Q10471 571 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 MPP2Q14168 576 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 GRM2Q14416 872 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 ACOX1Q15067 660 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 IL27RAQ6UWB1 636 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 GPRIN3Q6ZVF9 776 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 PAQR9Q6ZVX9 377 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 SPAG16Q8N0X2 631 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 C3orf58Q8NDZ4 430 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 OR7G1Q8NGA0 311 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 CLHC1Q8NHS4 586 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 EEF1AKMT1Q8WVE0 214 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 JPH3Q8WXH2 748 aaPredicted RBP6.09□□□□□ -1.43
VPS13D-202ENST00000460333 UTP4Q969X6 686 aaKnown RBP6.09□□□□□ -1.43
VPS13D-202ENST00000460333 SIPA1Q96FS4 1042 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 MED30Q96HR3 178 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 TOX2Q96NM4 488 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 SLC39A3Q9BRY0 314 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 NUSAP1Q9BXS6 441 aaKnown RBP6.09□□□□□ -1.43
VPS13D-202ENST00000460333 ANKRD60Q9BZ19 345 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 GLOD4Q9HC38 313 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 NT5MQ9NPB1 228 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 TAS2R7Q9NYW3 318 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 INSL6Q9Y581 213 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 ELOVL7A1L3X0 281 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 FABP12A6NFH5 140 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 NCF1BA6NI72 391 aaPredicted RBP6.09□□□□□ -1.43
VPS13D-202ENST00000460333 FAM159BA6NKW6 160 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 SLC38A8A6NNN8 435 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 NCF1CA8MVU1 366 aaPredicted RBP6.09□□□□□ -1.43
VPS13D-202ENST00000460333 NT5C1B-RDH14C9J2C7 533 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 H3BN98 237 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 CHST10O43529 356 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 RASAL1O95294 804 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 GALTP07902 379 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 ACADMP11310 421 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 NCF1P14598 390 aaPredicted RBP6.09□□□□□ -1.43
VPS13D-202ENST00000460333 FAUP35544 74 aaKnown RBP6.09□□□□□ -1.43
VPS13D-202ENST00000460333 AP3S2P59780 193 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 PEX6Q13608 980 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 CRY1Q16526 586 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 SLC9B1Q4ZJI4 515 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 SDHAF4Q5VUM1 108 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 RAP1GAP2Q684P5 730 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 KBTBD6Q86V97 674 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 RAB42Q8N4Z0 105 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 ANKLE1Q8NAG6 615 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 STON2Q8WXE9 905 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 NT5C3BQ969T7 300 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 PLD4Q96BZ4 506 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 POLR1EQ9GZS1 481 aaKnown RBP6.09□□□□□ -1.43
VPS13D-202ENST00000460333 ZBTB26Q9HCK0 441 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 VPS28Q9UK41 221 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 OAZ3Q9UMX2 235 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 PRAMEF33A0A0G2JMD5 474 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 TEX51A0A1B0GUA7 166 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 ATP6AP2A0A1C7CYW4 349 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 DCLK1O15075 740 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 ACOX3O15254 700 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 MSI1O43347 362 aaKnown RBP6.09□□□□□ -1.43
VPS13D-202ENST00000460333 PRAMEF10O60809 474 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 MTRF1O75570 445 aaKnown RBP6.09□□□□□ -1.43
VPS13D-202ENST00000460333 PGLSO95336 258 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 CKMT2P17540 419 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 MLLT6P55198 1093 aaPredicted RBP6.09□□□□□ -1.43
VPS13D-202ENST00000460333 STX4Q12846 297 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 IL18Q14116 193 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 NPTX1Q15818 432 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 SYTL3Q4VX76 610 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 TRNP1Q6NT89 227 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 SLC39A5Q6ZMH5 540 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 AHSA2Q719I0 299 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 CXXC5Q7LFL8 322 aaKnown RBP6.09□□□□□ -1.43
VPS13D-202ENST00000460333 TFAP2DQ7Z6R9 452 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 CMC1Q7Z7K0 106 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 GPSM1Q86YR5 675 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 DCP2Q8IU60 420 aaKnown RBP6.09□□□□□ -1.43
VPS13D-202ENST00000460333 SLITRK4Q8IW52 837 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 PHC3Q8NDX5 983 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 ATL1Q8WXF7 558 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 KHSRPQ92945 711 aaKnown RBP eCLIP6.09□□□□□ -1.436e-7■■□□□ 14.4
VPS13D-202ENST00000460333 SCLYQ96I15 445 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 SLC30A2Q9BRI3 323 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 SLC7A5P2Q9GIP4 190 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 RACGAP1Q9H0H5 632 aa6.09□□□□□ -1.43
VPS13D-202ENST00000460333 SPASTQ9UBP0 616 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms