RNA–Protein interactions for RNA: ENST00000452047.1

CPSF4-208, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 3

Gene CPSF4, Length 687 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-208ENST00000452047 TMTC4Q5T4D3 741 aa12.1□□□□□ -0.47
CPSF4-208ENST00000452047 LYPLAL1Q5VWZ2 237 aa12.1□□□□□ -0.47
CPSF4-208ENST00000452047 AMIGO1Q86WK6 493 aa12.1□□□□□ -0.47
CPSF4-208ENST00000452047 LRRC8AQ8IWT6 810 aa12.1□□□□□ -0.47
CPSF4-208ENST00000452047 ADGRF3Q8IZF5 1079 aa12.1□□□□□ -0.47
CPSF4-208ENST00000452047 SLC38A9Q8NBW4 561 aa12.1□□□□□ -0.47
CPSF4-208ENST00000452047 OR5AR1Q8NGP9 310 aa12.1□□□□□ -0.47
CPSF4-208ENST00000452047 OR4L1Q8NH43 312 aa12.1□□□□□ -0.47
CPSF4-208ENST00000452047 ELMO1Q92556 727 aa12.1□□□□□ -0.47
CPSF4-208ENST00000452047 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.1□□□□□ -0.47
CPSF4-208ENST00000452047 RUFY1Q96T51 708 aa12.1□□□□□ -0.47
CPSF4-208ENST00000452047 TWSG1Q9GZX9 223 aa12.1□□□□□ -0.47
CPSF4-208ENST00000452047 XKR8Q9H6D3 395 aa12.1□□□□□ -0.47
CPSF4-208ENST00000452047 EIF2B3Q9NR50 452 aaKnown RBP12.1□□□□□ -0.47
CPSF4-208ENST00000452047 KCND1Q9NSA2 647 aa12.1□□□□□ -0.47
CPSF4-208ENST00000452047 SOHLH2Q9NX45 425 aa12.1□□□□□ -0.47
CPSF4-208ENST00000452047 ICKQ9UPZ9 632 aa12.1□□□□□ -0.47
CPSF4-208ENST00000452047 ZKSCAN5Q9Y2L8 839 aa12.1□□□□□ -0.47
CPSF4-208ENST00000452047 PCDHB3Q9Y5E6 796 aa12.1□□□□□ -0.47
CPSF4-208ENST00000452047 KCNMB2Q9Y691 235 aa12.1□□□□□ -0.47
CPSF4-208ENST00000452047 FER1L5A0AVI2 2057 aa12.09□□□□□ -0.47
CPSF4-208ENST00000452047 C2orf74A8MZ97 194 aa12.09□□□□□ -0.47
CPSF4-208ENST00000452047 KATNA1O75449 491 aa12.09□□□□□ -0.47
CPSF4-208ENST00000452047 CREG1O75629 220 aa12.09□□□□□ -0.47
CPSF4-208ENST00000452047 RECKO95980 971 aa12.09□□□□□ -0.47
CPSF4-208ENST00000452047 FGGP02679 453 aa12.09□□□□□ -0.47
CPSF4-208ENST00000452047 OR56A5P0C7T3 313 aa12.09□□□□□ -0.47
CPSF4-208ENST00000452047 TPBGLP0DKB5 382 aa12.09□□□□□ -0.47
CPSF4-208ENST00000452047 GPS2Q13227 327 aa12.09□□□□□ -0.47
CPSF4-208ENST00000452047 ERV3-1Q14264 604 aa12.09□□□□□ -0.47
CPSF4-208ENST00000452047 BRD3Q15059 726 aa12.09□□□□□ -0.47
CPSF4-208ENST00000452047 PRAMEF17Q5VTA0 474 aa12.09□□□□□ -0.47
CPSF4-208ENST00000452047 FAM199XQ6PEV8 388 aaPredicted RBP12.09□□□□□ -0.47
CPSF4-208ENST00000452047 NAPRTQ6XQN6 538 aa12.09□□□□□ -0.47
CPSF4-208ENST00000452047 NLRP9Q7RTR0 991 aa12.09□□□□□ -0.47
CPSF4-208ENST00000452047 TMEM135Q86UB9 458 aa12.09□□□□□ -0.47
CPSF4-208ENST00000452047 TMEM126BQ8IUX1 230 aa12.09□□□□□ -0.47
CPSF4-208ENST00000452047 TBC1D21Q8IYX1 336 aa12.09□□□□□ -0.47
CPSF4-208ENST00000452047 TRIM58Q8NG06 486 aa12.09□□□□□ -0.47
CPSF4-208ENST00000452047 OR5K2Q8NHB8 316 aa12.09□□□□□ -0.47
CPSF4-208ENST00000452047 LRFN5Q96NI6 719 aa12.09□□□□□ -0.47
CPSF4-208ENST00000452047 TRAPPC9Q96Q05 1148 aa12.09□□□□□ -0.47
CPSF4-208ENST00000452047 ACTL8Q9H568 366 aa12.09□□□□□ -0.47
CPSF4-208ENST00000452047 ACTR10Q9NZ32 417 aa12.09□□□□□ -0.47
CPSF4-208ENST00000452047 ASF1AQ9Y294 204 aa12.09□□□□□ -0.47
CPSF4-208ENST00000452047 DRG1Q9Y295 367 aaKnown RBP12.09□□□□□ -0.47
CPSF4-208ENST00000452047 PVRP15151 417 aa12.08□□□□□ -0.48
CPSF4-208ENST00000452047 SHMT2P34897 504 aa12.08□□□□□ -0.48
CPSF4-208ENST00000452047 RORAP35398 523 aa12.08□□□□□ -0.48
CPSF4-208ENST00000452047 DEKP35659 375 aaKnown RBP12.08□□□□□ -0.48
CPSF4-208ENST00000452047 PRAMEP78395 509 aa12.08□□□□□ -0.48
CPSF4-208ENST00000452047 CRADDP78560 199 aa12.08□□□□□ -0.48
CPSF4-208ENST00000452047 PLOD1Q02809 727 aaPredicted RBP12.08□□□□□ -0.48
CPSF4-208ENST00000452047 SYTL3Q4VX76 610 aa12.08□□□□□ -0.48
CPSF4-208ENST00000452047 SPESP1Q6UW49 350 aa12.08□□□□□ -0.48
CPSF4-208ENST00000452047 C4orf22Q6V702 233 aa12.08□□□□□ -0.48
CPSF4-208ENST00000452047 UNC5AQ6ZN44 842 aa12.08□□□□□ -0.48
CPSF4-208ENST00000452047 ATG14Q6ZNE5 492 aa12.08□□□□□ -0.48
CPSF4-208ENST00000452047 PPHLN1Q8NEY8 458 aaKnown RBP12.08□□□□□ -0.48
CPSF4-208ENST00000452047 OR6P1Q8NGX9 317 aa12.08□□□□□ -0.48
CPSF4-208ENST00000452047 OR1L3Q8NH93 324 aa12.08□□□□□ -0.48
CPSF4-208ENST00000452047 FLVCR1-AS1Q8TAF5 88 aa12.08□□□□□ -0.48
CPSF4-208ENST00000452047 C9orf43Q8TAL5 461 aaPredicted RBP12.08□□□□□ -0.48
CPSF4-208ENST00000452047 LKAAEAR1Q8TD35 194 aa12.08□□□□□ -0.48
CPSF4-208ENST00000452047 ABHD17AQ96GS6 310 aa12.08□□□□□ -0.48
CPSF4-208ENST00000452047 GPR87Q9BY21 358 aa12.08□□□□□ -0.48
CPSF4-208ENST00000452047 TRIM4Q9C037 500 aa12.08□□□□□ -0.48
CPSF4-208ENST00000452047 FANCEQ9HB96 536 aa12.08□□□□□ -0.48
CPSF4-208ENST00000452047 SYTL2Q9HCH5 934 aa12.08□□□□□ -0.48
CPSF4-208ENST00000452047 CHRAC1Q9NRG0 131 aa12.08□□□□□ -0.48
CPSF4-208ENST00000452047 TREX1Q9NSU2 369 aa12.08□□□□□ -0.48
CPSF4-208ENST00000452047 MARCH4Q9P2E8 410 aaPredicted RBP12.08□□□□□ -0.48
CPSF4-208ENST00000452047 CDYLQ9Y232 598 aa12.08□□□□□ -0.48
CPSF4-208ENST00000452047 POLHQ9Y253 713 aa12.08□□□□□ -0.48
CPSF4-208ENST00000452047 PIPSLA2A3N6 862 aa12.07□□□□□ -0.48
CPSF4-208ENST00000452047 CDC14CA4D256 554 aa12.07□□□□□ -0.48
CPSF4-208ENST00000452047 TMEM150CB9EJG8 249 aa12.07□□□□□ -0.48
CPSF4-208ENST00000452047 H3BMH7 237 aa12.07□□□□□ -0.48
CPSF4-208ENST00000452047 SEC16AO15027 2179 aa12.07□□□□□ -0.48
CPSF4-208ENST00000452047 GPC4O75487 556 aa12.07□□□□□ -0.48
CPSF4-208ENST00000452047 WISP1O95388 367 aa12.07□□□□□ -0.48
CPSF4-208ENST00000452047 UGT2B7P16662 529 aa12.07□□□□□ -0.48
CPSF4-208ENST00000452047 PTPN4P29074 926 aa12.07□□□□□ -0.48
CPSF4-208ENST00000452047 CCR7P32248 378 aa12.07□□□□□ -0.48
CPSF4-208ENST00000452047 CXCR5P32302 372 aa12.07□□□□□ -0.48
CPSF4-208ENST00000452047 KCNJ1P48048 391 aa12.07□□□□□ -0.48
CPSF4-208ENST00000452047 SESN2P58004 480 aaPredicted RBP12.07□□□□□ -0.48
CPSF4-208ENST00000452047 RPS18P62269 152 aaKnown RBP12.07□□□□□ -0.48
CPSF4-208ENST00000452047 BASP1P80723 227 aaKnown RBP12.07□□□□□ -0.48
CPSF4-208ENST00000452047 KCTD19Q17RG1 926 aaPredicted RBP12.07□□□□□ -0.48
CPSF4-208ENST00000452047 FASTKD1Q53R41 847 aaKnown RBP12.07□□□□□ -0.48
CPSF4-208ENST00000452047 AARS2Q5JTZ9 985 aaKnown RBP12.07□□□□□ -0.48
CPSF4-208ENST00000452047 PCID2Q5JVF3 399 aa12.07□□□□□ -0.48
CPSF4-208ENST00000452047 PLEKHS1Q5SXH7 462 aa12.07□□□□□ -0.48
CPSF4-208ENST00000452047 IZUMO3Q5VZ72 239 aa12.07□□□□□ -0.48
CPSF4-208ENST00000452047 CDHR3Q6ZTQ4 885 aa12.07□□□□□ -0.48
CPSF4-208ENST00000452047 LDB1Q86U70 411 aaPredicted RBP12.07□□□□□ -0.48
CPSF4-208ENST00000452047 TRIM73Q86UV7 250 aa12.07□□□□□ -0.48
CPSF4-208ENST00000452047 PTRH1Q86Y79 214 aaKnown RBP12.07□□□□□ -0.48
CPSF4-208ENST00000452047 VRK3Q8IV63 474 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms