RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 ZNF99A8MXY4 864 aaPredicted RBP11.65□□□□□ -0.54
MSH6-204ENST00000445503 STX16O14662 325 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 CLDN11O75508 207 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 CREG1O75629 220 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 CKMP06732 381 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 MZF1P28698 734 aaPredicted RBP11.65□□□□□ -0.54
MSH6-204ENST00000445503 PBLDP30039 288 aaPredicted RBP11.65□□□□□ -0.54
MSH6-204ENST00000445503 CES5AQ6NT32 575 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 CYHR1Q6ZMK1 362 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 POC5Q8NA72 575 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 ZBTB8BQ8NAP8 495 aaPredicted RBP11.65□□□□□ -0.54
MSH6-204ENST00000445503 GPR156Q8NFN8 814 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 OR52J3Q8NH60 311 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 MYEOVQ96EZ4 313 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 BOCQ9BWV1 1114 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 MTRRQ9UBK8 725 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 ABT1Q9ULW3 272 aaKnown RBP11.65□□□□□ -0.54
MSH6-204ENST00000445503 EPOP01588 193 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 RPS17P08708 135 aaKnown RBP11.65□□□□□ -0.54
MSH6-204ENST00000445503 SOAT1P35610 550 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 BCAP31P51572 246 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 NFKB2Q00653 900 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 RNF19BQ6ZMZ0 732 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 SLC22A15Q8IZD6 547 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 RBFAQ8N0V3 343 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 TAGAPQ8N103 731 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 MCMBPQ9BTE3 642 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 ERVK-18Q9QC07 812 aa11.65□□□□□ -0.54
MSH6-204ENST00000445503 H0Y858 1186 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 SCELO95171 688 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 HRH2P25021 359 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 OPRL1P41146 370 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 ALDH7A1P49419 539 aaKnown RBP11.64□□□□□ -0.55
MSH6-204ENST00000445503 FLT3LGP49771 235 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 IRF8Q02556 426 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 CACNG1Q06432 222 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 CCDC92Q53HC0 331 aaPredicted RBP11.64□□□□□ -0.55
MSH6-204ENST00000445503 MANEALQ5VSG8 457 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 SLC24A5Q71RS6 500 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 SPRED1Q7Z699 444 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 P2RY8Q86VZ1 359 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 MCFD2Q8NI22 146 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 ZNF382Q96SR6 550 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 YTHDF1Q9BYJ9 559 aaKnown RBP11.64□□□□□ -0.55
MSH6-204ENST00000445503 ABCD2Q9UBJ2 740 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 SNX8Q9Y5X2 465 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 FUOMA2VDF0 154 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 PER2O15055 1255 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 EPN2O95208 641 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 RPIAP49247 311 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 PRIM2P49643 509 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 CDH4P55283 916 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 RPS14P62263 151 aaKnown RBP11.64□□□□□ -0.55
MSH6-204ENST00000445503 FAM189BP81408 668 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 SFSWAPQ12872 951 aaKnown RBP11.64□□□□□ -0.55
MSH6-204ENST00000445503 RBM48Q5RL73 367 aaKnown RBP11.64□□□□□ -0.55
MSH6-204ENST00000445503 Q6ZSR9 355 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 C11orf74Q86VG3 221 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 STX19Q8N4C7 294 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 ACDQ96AP0 544 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 MYO19Q96H55 970 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 UHRF1Q96T88 793 aaPredicted RBP11.64□□□□□ -0.55
MSH6-204ENST00000445503 ZBED2Q9BTP6 218 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 GPR62Q9BZJ7 368 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 MIR1-1HGQ9H1L0 117 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 UTS2RQ9UKP6 389 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 HAS3O00219 553 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 TNFRSF10BO14763 440 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 IMPDH2P12268 514 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 TCF3P15923 654 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 PSMD8P48556 350 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 EMP3P54852 163 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 TRAF3Q13114 568 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 OR4F3Q6IEY1 312 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 GPR153Q6NV75 609 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 LIMS2Q7Z4I7 341 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 HIPK1Q86Z02 1210 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 RGL4Q8IZJ4 473 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 OR5K1Q8NHB7 308 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 CD200R1Q8TD46 325 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 FUBP3Q96I24 572 aaKnown RBP eCLIP11.64□□□□□ -0.55
MSH6-204ENST00000445503 PSKH2Q96QS6 385 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 REXO4Q9GZR2 422 aaKnown RBP11.64□□□□□ -0.55
MSH6-204ENST00000445503 POPDC3Q9HBV1 291 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 C1orf109Q9NX04 203 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 FAM32AQ9Y421 112 aaKnown RBP11.64□□□□□ -0.55
MSH6-204ENST00000445503 H0YAE9 185 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 M0QZQ0 153 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 CYP11A1P05108 521 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 RELAQ04206 551 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 IHHQ14623 411 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 DCDC5Q6ZRR9 648 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 SPARTQ8N0X7 666 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 ZBTB2Q8N680 514 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 TTC29Q8NA56 475 aaPredicted RBP11.64□□□□□ -0.55
MSH6-204ENST00000445503 PIK3C3Q8NEB9 887 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 ABHD11Q8NFV4 315 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 TSPEARQ8WU66 669 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 EPS8L2Q9H6S3 715 aa11.64□□□□□ -0.55
MSH6-204ENST00000445503 TMEM9Q9P0T7 183 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms