RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 PHF21BQ96EK2 531 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 SMAD5Q99717 465 aaKnown RBP7.08□□□□□ -1.28
VPS53-204ENST00000437048 APBA2Q99767 749 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 COL20A1Q9P218 1284 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 E2F3O00716 465 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 WNT7AO00755 349 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 PTGER3P43115 390 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 Q8N402 240 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 EID2Q8N6I1 236 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 PCDH19Q8TAB3 1148 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 SLC7A8Q9UHI5 535 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 HEBP2Q9Y5Z4 205 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 ATP5A1P25705 553 aaKnown RBP7.08□□□□□ -1.28
VPS53-204ENST00000437048 BRCC3P46736 316 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 CARM1Q86X55 608 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 SEPT12Q8IYM1 358 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 CENPSQ8N2Z9 138 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 ZNF709Q8N972 641 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 EFCAB11Q9BUY7 163 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 CADM1Q9BY67 442 aaKnown RBP7.08□□□□□ -1.28
VPS53-204ENST00000437048 SEMA6AQ9H2E6 1030 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 POLR3HQ9Y535 204 aaPredicted RBP7.08□□□□□ -1.28
VPS53-204ENST00000437048 TLL1O43897 1013 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 BNIP3LO60238 219 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 SGPL1O95470 568 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 OR1E1P30953 314 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 DEFA5Q01523 94 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 TAGLNQ01995 201 aaKnown RBP7.08□□□□□ -1.28
VPS53-204ENST00000437048 ABHD18Q0P651 414 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 OCLNQ16625 522 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 TIGD2Q4W5G0 525 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 VSTM1Q6UX27 236 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 CSPG4P5Q96PW8 444 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 DAGLAQ9Y4D2 1042 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 MT-ND5P03915 603 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 SLC2A5P22732 501 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 GPR1P46091 355 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 TGM4P49221 684 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 ALG10BQ5I7T1 473 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 TMEM53Q6P2H8 277 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 SLC13A3Q8WWT9 602 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 TAS2R10Q9NYW0 307 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 HCN2Q9UL51 889 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 CBY1Q9Y3M2 126 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 PTPRMP28827 1452 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 TRBC1P01850 177 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 LRG1P02750 347 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 OR3A3P47888 321 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 OR3A2P47893 321 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 FAPQ12884 760 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 KCNC3Q14003 757 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 PLEKHG7Q6ZR37 379 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 JAZF1Q86VZ6 243 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 GATAD2BQ8WXI9 593 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 C8orf37Q96NL8 207 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 SECISBP2Q96T21 854 aaKnown RBP7.08□□□□□ -1.28
VPS53-204ENST00000437048 CEP41Q9BYV8 373 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 MTG2Q9H4K7 406 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 TRPV4Q9HBA0 871 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 CYB5R1Q9UHQ9 305 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 NPHP4O75161 1426 aaPredicted RBP7.08□□□□□ -1.28
VPS53-204ENST00000437048 SSX4O60224 188 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 CD44P16070 742 aaKnown RBP7.08□□□□□ -1.28
VPS53-204ENST00000437048 NDUFS1P28331 727 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 VSX2P58304 361 aaPredicted RBP7.08□□□□□ -1.28
VPS53-204ENST00000437048 DNAJB13P59910 316 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 SLC10A7Q0GE19 358 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 GNMTQ14749 295 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 SLC9A5Q14940 896 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 FNBP1LQ5T0N5 605 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 EFCAB12Q6NXP0 572 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 TIPARPQ7Z3E1 657 aaKnown RBP7.08□□□□□ -1.28
VPS53-204ENST00000437048 DENND1CQ8IV53 801 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 ARHGAP12Q8IWW6 846 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 FTMTQ8N4E7 242 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 PSD4Q8NDX1 1056 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 OR4L1Q8NH43 312 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 CXorf40BQ96DE9 158 aa7.08□□□□□ -1.28
VPS53-204ENST00000437048 A0A1W2PP18 115 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 OR2B3O76000 313 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 EPHA3P29320 983 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 GKP32189 559 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 GALNT1Q10472 559 aaPredicted RBP7.07□□□□□ -1.28
VPS53-204ENST00000437048 C4orf46Q504U0 113 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 FAM69AQ5T7M9 428 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 AADACL4Q5VUY2 407 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 C17orf64Q86WR6 236 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 FAM163AQ96GL9 167 aaPredicted RBP7.07□□□□□ -1.28
VPS53-204ENST00000437048 PCDHB5Q9Y5E4 795 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 SNCAIPQ9Y6H5 919 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 OR6C70A6NIJ9 312 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 DCLK1O15075 740 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 NME6O75414 186 aaPredicted RBP7.07□□□□□ -1.28
VPS53-204ENST00000437048 MTMR2Q13614 643 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 SELPLGQ14242 412 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 APTXQ7Z2E3 356 aaKnown RBP7.07□□□□□ -1.28
VPS53-204ENST00000437048 RNF31Q96EP0 1072 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 MFSD14AQ96MC6 490 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 RNF32Q9H0A6 362 aa7.07□□□□□ -1.28
VPS53-204ENST00000437048 UCHL1P09936 223 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms