RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 DGLUCYQ7Z3D6 616 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 AACSQ86V21 672 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 NUP93Q8N1F7 819 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 GALNT16Q8N428 558 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 CHCHD4Q8N4Q1 142 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 HORMAD2Q8N7B1 307 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 KLHDC9Q8NEP7 349 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 ANKRD20A12PQ8NF67 263 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 SLC35F5Q8WV83 523 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 ATL1Q8WXF7 558 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 PIBF1Q8WXW3 757 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 EGLN2Q96KS0 407 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 NEK1Q96PY6 1258 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 TGS1Q96RS0 853 aaKnown RBP4.04□□□□□ -1.76
HMGB3-203ENST00000430118 SMC6Q96SB8 1091 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 GAD1Q99259 594 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 SH2D3AQ9BRG2 576 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 MMTAG2Q9BU76 263 aaKnown RBP4.04□□□□□ -1.76
HMGB3-203ENST00000430118 MLPHQ9BV36 600 aaPredicted RBP4.04□□□□□ -1.76
HMGB3-203ENST00000430118 KRTAP4-5Q9BYR2 181 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 SEMA4CQ9C0C4 833 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 WDR26Q9H7D7 661 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 COPS7BQ9H9Q2 264 aaPredicted RBP4.04□□□□□ -1.76
HMGB3-203ENST00000430118 HINT3Q9NQE9 182 aaKnown RBP4.04□□□□□ -1.76
HMGB3-203ENST00000430118 THSD1Q9NS62 852 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 OLAHQ9NV23 265 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 TMEM45AQ9NWC5 275 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 PAG1Q9NWQ8 432 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 ASB6Q9NWX5 421 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 PLEKHB1Q9UF11 243 aaPredicted RBP4.04□□□□□ -1.76
HMGB3-203ENST00000430118 LEF1Q9UJU2 399 aaPredicted RBP4.04□□□□□ -1.76
HMGB3-203ENST00000430118 ACSL5Q9ULC5 683 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 LIPT1Q9Y234 373 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 TMEM184BQ9Y519 407 aaPredicted RBP4.04□□□□□ -1.76
HMGB3-203ENST00000430118 COL11A1P12107 1806 aaPredicted RBP4.04□□□□□ -1.76
HMGB3-203ENST00000430118 CHD7Q9P2D1 2997 aa4.04□□□□□ -1.76
HMGB3-203ENST00000430118 CFAP54Q96N23 3096 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 DMDP11532 3685 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 PRR23AA6NEV1 266 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 TMEM221A6NGB7 291 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 ANXA2P2A6NMY6 339 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 PROB1E7EW31 1015 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 M0R296 226 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 VCYO14598 125 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 MDM4O15151 490 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 PLRG1O43660 514 aaKnown RBP4.03□□□□□ -1.76
HMGB3-203ENST00000430118 UGDHO60701 494 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 TRUB2O95900 331 aaKnown RBP4.03□□□□□ -1.76
HMGB3-203ENST00000430118 LINGO3P0C6S8 592 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 CTSAP10619 480 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 SRCP12931 536 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 INSRRP14616 1297 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 CERS1P27544 350 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 HOXC13P31276 330 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 AVPR1AP37288 418 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 USP8P40818 1118 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 MAGEA9P43362 315 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 CCR10P46092 362 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 ME1P48163 572 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 RASSF2P50749 326 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 POLGP54098 1239 aaPredicted RBP4.03□□□□□ -1.76
HMGB3-203ENST00000430118 CDH12P55289 794 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 RWDD2BP57060 319 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 NUCB2P80303 420 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 GRSF1Q12849 480 aaKnown RBP eCLIP4.03□□□□□ -1.76
HMGB3-203ENST00000430118 SLC10A2Q12908 348 aaPredicted RBP4.03□□□□□ -1.76
HMGB3-203ENST00000430118 FOXF2Q12947 444 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 RALGDSQ12967 914 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 ITGA7Q13683 1181 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 CAPSQ13938 189 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 PTPRCAPQ14761 206 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 E2F5Q15329 346 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 C2orf68Q2NKX9 166 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 TTC31Q49AM3 519 aaPredicted RBP4.03□□□□□ -1.76
HMGB3-203ENST00000430118 CCDC92Q53HC0 331 aaPredicted RBP4.03□□□□□ -1.76
HMGB3-203ENST00000430118 PAPD7Q5XG87 772 aaKnown RBP4.03□□□□□ -1.76
HMGB3-203ENST00000430118 FRG2Q64ET8 278 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 TPRG1Q6ZUI0 275 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 INTS8Q75QN2 995 aaKnown RBP4.03□□□□□ -1.76
HMGB3-203ENST00000430118 ADCK2Q7Z695 626 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 DEFB128Q7Z7B8 93 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 LDB1Q86U70 411 aaPredicted RBP4.03□□□□□ -1.76
HMGB3-203ENST00000430118 HAPLN4Q86UW8 402 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 FAM217AQ8IXS0 508 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 EFCAB13Q8IY85 973 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 CCDC13Q8IYE1 715 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 TMCO5AQ8N6Q1 288 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 CFAP61Q8NHU2 1237 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 HASPINQ8TF76 798 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 MRPS27Q92552 414 aaKnown RBP4.03□□□□□ -1.76
HMGB3-203ENST00000430118 LARP4BQ92615 738 aaKnown RBP4.03□□□□□ -1.76
HMGB3-203ENST00000430118 MRPL38Q96DV4 380 aaKnown RBP4.03□□□□□ -1.76
HMGB3-203ENST00000430118 FSD1Q9BTV5 496 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 NPFFR1Q9GZQ6 430 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 UPF3AQ9H1J1 476 aaKnown RBP4.03□□□□□ -1.76
HMGB3-203ENST00000430118 DNAJC18Q9H819 358 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 NOL11Q9H8H0 719 aaKnown RBP4.03□□□□□ -1.76
HMGB3-203ENST00000430118 IL17RBQ9NRM6 502 aa4.03□□□□□ -1.76
HMGB3-203ENST00000430118 SIRT3Q9NTG7 399 aaPredicted RBP4.03□□□□□ -1.76
HMGB3-203ENST00000430118 AATFQ9NY61 560 aaKnown RBP eCLIP4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms