RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 COLEC12Q5KU26 742 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 PDE12Q6L8Q7 609 aaKnown RBP8.49□□□□□ -1.05
USP40-203ENST00000427112 GTF2H2CQ6P1K8 395 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 DOK6Q6PKX4 331 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 CEP68Q76N32 757 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 MON1AQ86VX9 555 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 ABHD11Q8NFV4 315 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 BRSK1Q8TDC3 778 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 KCNN1Q92952 543 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 COX4I2Q96KJ9 171 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 KCNC2Q96PR1 638 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 TPK1Q9H3S4 243 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 MTG2Q9H4K7 406 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 AASDHPPTQ9NRN7 309 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 AIG1Q9NVV5 245 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 GIN1Q9NXP7 522 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 ABCG2Q9UNQ0 655 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 TRIOO75962 3097 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 TNFRSF10BO14763 440 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 PGLSO95336 258 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 PENKP01210 267 aaPredicted RBP8.49□□□□□ -1.05
USP40-203ENST00000427112 RHOQP17081 205 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 CTGFP29279 349 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 TPTEP56180 551 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 DAG1Q14118 895 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 INAQ16352 499 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 RTP2Q5QGT7 225 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 CCNYL2Q5T2Q4 361 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 BROXQ5VW32 411 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 FAM171BQ6P995 826 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 SUSD1Q6UWL2 747 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 ANKS3Q6ZW76 656 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 THAP5Q7Z6K1 395 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 MEX3DQ86XN8 651 aaKnown RBP8.49□□□□□ -1.05
USP40-203ENST00000427112 BBS5Q8N3I7 341 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 TNIP2Q8NFZ5 429 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 PROX1Q92786 737 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 OTUB1Q96FW1 271 aaPredicted RBP8.49□□□□□ -1.05
USP40-203ENST00000427112 SLC22A12Q96S37 553 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 PARK7Q99497 189 aaKnown RBP8.49□□□□□ -1.05
USP40-203ENST00000427112 EPB41L1Q9H4G0 881 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 ACTL8Q9H568 366 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 PARVBQ9HBI1 364 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 ELOVL2Q9NXB9 296 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 CRLS1Q9UJA2 301 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 PDE10AQ9Y233 779 aa8.49□□□□□ -1.05
USP40-203ENST00000427112 TET1Q8NFU7 2136 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 SIP14410 1827 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 KPNA5O15131 536 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 KERAO60938 352 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 PRAMEF1O95521 474 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 SDHBP21912 280 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 OR1D2P34982 312 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 RGS21Q2M5E4 152 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 BRMS1LQ5PSV4 323 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 KIAA1841Q6NSI8 718 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 TAF2Q6P1X5 1199 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 CLECL1Q8IZS7 167 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 SPARTQ8N0X7 666 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 OR7A2PQ8NGA2 310 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 WFDC5Q8TCV5 224 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 ROPN1LQ96C74 230 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 NRTNQ99748 197 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 RRAGCQ9HB90 399 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 PLXNA1Q9UIW2 1896 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 A0A096LPI6 279 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 OR2AG2A6NM03 316 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 CXCR6O00574 342 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 PER2O15055 1255 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 SCAMP1O15126 338 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 TSPAN9O75954 239 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 APOL3O95236 402 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 NDST3O95803 873 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 KLKB1P03952 638 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 C21orf33P30042 268 aaPredicted RBP8.48□□□□□ -1.05
USP40-203ENST00000427112 CORO1AP31146 461 aaKnown RBP8.48□□□□□ -1.05
USP40-203ENST00000427112 HALP42357 657 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 NR4A2P43354 598 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 STK19P49842 368 aaPredicted RBP8.48□□□□□ -1.05
USP40-203ENST00000427112 UBE3AQ05086 875 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 CRY1Q16526 586 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 DPY19L1Q2PZI1 675 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 CLLU1OSQ5K130 101 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 CATSPEREQ5SY80 951 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 RTN4RL1Q86UN2 441 aaPredicted RBP8.48□□□□□ -1.05
USP40-203ENST00000427112 SERPINA9Q86WD7 417 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 RGL4Q8IZJ4 473 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 ZCCHC7Q8N3Z6 543 aaKnown RBP8.48□□□□□ -1.05
USP40-203ENST00000427112 CD200R1Q8TD46 325 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 HDAC2Q92769 488 aaKnown RBP8.48□□□□□ -1.05
USP40-203ENST00000427112 KIAA1191Q96A73 305 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 MED8Q96G25 268 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 BIRC8Q96P09 236 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 HEPHQ9BQS7 1158 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 CLPBQ9H078 707 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 SYTL2Q9HCH5 934 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 EXOSC4Q9NPD3 245 aaKnown RBP8.48□□□□□ -1.05
USP40-203ENST00000427112 CTPS2Q9NRF8 586 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 FAM118AQ9NWS6 357 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 ARL15Q9NXU5 204 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms