RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 R4GN57 208 aa13.9□□□□□ -0.18
SF3B1-204ENST00000414963 LRP4O75096 1905 aa13.9□□□□□ -0.18
SF3B1-204ENST00000414963 A8MT66 165 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 LMO7DNF2Z398 122 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 STX16-NPEPL1H3BU86 382 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 UBXN8O00124 270 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 MYO1CO00159 1063 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 STX16O14662 325 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 FFAR2O15552 330 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 PIAS2O75928 621 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 IPO13O94829 963 aaKnown RBP13.89□□□□□ -0.19
SF3B1-204ENST00000414963 EML2O95834 649 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 HIST1H2AGP0C0S8 130 aaPredicted RBP13.89□□□□□ -0.19
SF3B1-204ENST00000414963 F3P13726 295 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 HIST1H2ADP20671 130 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 MAP4P27816 1152 aaKnown RBP13.89□□□□□ -0.19
SF3B1-204ENST00000414963 GGT5P36269 586 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 HALP42357 657 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 HNMTP50135 292 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 ALDH18A1P54886 795 aaKnown RBP13.89□□□□□ -0.19
SF3B1-204ENST00000414963 RPE65Q16518 533 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 PDK4Q16654 411 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.89□□□□□ -0.19
SF3B1-204ENST00000414963 SULT1C3Q6IMI6 304 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 METTL2BQ6P1Q9 378 aaKnown RBP13.89□□□□□ -0.19
SF3B1-204ENST00000414963 TTC23LQ6PF05 361 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 IYDQ6PHW0 289 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 SLC30A9Q6PML9 568 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 IL27RAQ6UWB1 636 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 FRA10AC1Q70Z53 315 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 TAF8Q7Z7C8 310 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 GKN2Q86XP6 184 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 NUDCD3Q8IVD9 361 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 C10orf107Q8IVU9 208 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 OR5K2Q8NHB8 316 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 CFAP61Q8NHU2 1237 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 RAB3IL1Q8TBN0 382 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 MAGEC3Q8TD91 643 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 ZFPM2Q8WW38 1151 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 CKAP2Q8WWK9 683 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 HIST1H2AHQ96KK5 128 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 CCDC138Q96M89 665 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 HIST1H2AJQ99878 128 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 PAIP2Q9BPZ3 127 aaKnown RBP13.89□□□□□ -0.19
SF3B1-204ENST00000414963 H2AFJQ9BTM1 129 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 CCDC134Q9H6E4 229 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 CAAP1Q9H8G2 361 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 SCHIP1Q9P0W5 487 aaPredicted RBP13.89□□□□□ -0.19
SF3B1-204ENST00000414963 PTBP2Q9UKA9 531 aaKnown RBP13.89□□□□□ -0.19
SF3B1-204ENST00000414963 RAB23Q9ULC3 237 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 ASF1AQ9Y294 204 aa13.89□□□□□ -0.19
SF3B1-204ENST00000414963 SPAG17Q6Q759 2223 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 KIR2DS5A0A0G2JLQ3 304 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 A0A0G2JNG1 304 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 PDZK1P1A8MUH7 402 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 SUPT3HB4E1H0 165 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 KIR2DS3K7RE56 304 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 KLF11O14901 512 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 POLR3GO15318 223 aaPredicted RBP13.88□□□□□ -0.19
SF3B1-204ENST00000414963 YY2O15391 372 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 YKT6O15498 198 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 AQP9O43315 295 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 SNX2O60749 519 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 TRIM13O60858 407 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 H2AFYO75367 372 aaKnown RBP13.88□□□□□ -0.19
SF3B1-204ENST00000414963 SUPT3HO75486 399 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 SLC34A2O95436 690 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 CELA2BP08218 269 aaPredicted RBP13.88□□□□□ -0.19
SF3B1-204ENST00000414963 MTHFD1P11586 935 aaKnown RBP13.88□□□□□ -0.19
SF3B1-204ENST00000414963 SLC2A4P14672 509 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 XRCC1P18887 633 aaPredicted RBP13.88□□□□□ -0.19
SF3B1-204ENST00000414963 IMPDH1P20839 514 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 KCNA4P22459 653 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 NDUFS1P28331 727 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 ARRB1P49407 418 aaPredicted RBP13.88□□□□□ -0.19
SF3B1-204ENST00000414963 ASPHQ12797 758 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 TCF15Q12870 199 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 C1orf61Q13536 156 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 KIR2DS5Q14953 304 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 SHBQ15464 509 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 TUBB8Q3ZCM7 444 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 LIPMQ5VYY2 423 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 LAIR1Q6GTX8 287 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 OGFOD3Q6PK18 319 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 RGS9BPQ6ZS82 235 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 DCUN1D3Q8IWE4 304 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 TRIM42Q8IWZ5 723 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 TCAIMQ8N3R3 496 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 FBXO39Q8N4B4 442 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 ZNF548Q8NEK5 533 aaPredicted RBP13.88□□□□□ -0.19
SF3B1-204ENST00000414963 LMX1AQ8TE12 382 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 SREK1Q8WXA9 508 aaKnown RBP13.88□□□□□ -0.19
SF3B1-204ENST00000414963 RAD51AP1Q96B01 352 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 RHBDF1Q96CC6 855 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 FBXL8Q96CD0 374 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 L3HYPDHQ96EM0 354 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 C12orf66Q96MD2 445 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 MECRQ9BV79 373 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 C1QTNF3Q9BXJ4 246 aa13.88□□□□□ -0.19
SF3B1-204ENST00000414963 IRF2BPLQ9H1B7 796 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms