RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 CCDC74AQ96AQ1 378 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 CPNE1Q99829 537 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 CCDC3Q9BQI4 270 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 TMEM168Q9H0V1 697 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 OR2AG1Q9H205 316 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 EURLQ9NYK6 297 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 ZFATQ9P243 1243 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 KLHL42Q9P2K6 505 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 SLC17A6Q9P2U8 582 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 SPASTQ9UBP0 616 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 ZNF180Q9UJW8 692 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 SUFUQ9UMX1 484 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 TMEM98Q9Y2Y6 226 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 PRSS21Q9Y6M0 314 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 SPTBP11277 2137 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 BOD1L1Q8NFC6 3051 aa9.01□□□□□ -0.97
VPS53-203ENST00000401468 HMX2A2RU54 273 aa9□□□□□ -0.97
VPS53-203ENST00000401468 A6NCN8 305 aa9□□□□□ -0.97
VPS53-203ENST00000401468 NEMP2A6NFY4 417 aa9□□□□□ -0.97
VPS53-203ENST00000401468 H3BMM5 538 aa9□□□□□ -0.97
VPS53-203ENST00000401468 PYCARD-AS1I3L0S3 204 aa9□□□□□ -0.97
VPS53-203ENST00000401468 WISP3O95389 354 aaPredicted RBP9□□□□□ -0.97
VPS53-203ENST00000401468 ACSL3O95573 720 aa9□□□□□ -0.97
VPS53-203ENST00000401468 MSH3P20585 1137 aa9□□□□□ -0.97
VPS53-203ENST00000401468 AK4P27144 223 aaPredicted RBP9□□□□□ -0.97
VPS53-203ENST00000401468 AKT1P31749 480 aa9□□□□□ -0.97
VPS53-203ENST00000401468 GP5P40197 560 aa9□□□□□ -0.97
VPS53-203ENST00000401468 PDX1P52945 283 aa9□□□□□ -0.97
VPS53-203ENST00000401468 CXADRP78310 365 aa9□□□□□ -0.97
VPS53-203ENST00000401468 CCL7P80098 99 aa9□□□□□ -0.97
VPS53-203ENST00000401468 MPP1Q00013 466 aa9□□□□□ -0.97
VPS53-203ENST00000401468 EFTUD2Q15029 972 aaKnown RBP eCLIP9□□□□□ -0.97
VPS53-203ENST00000401468 KLHL38Q2WGJ6 581 aa9□□□□□ -0.97
VPS53-203ENST00000401468 OXLD1Q5BKU9 147 aa9□□□□□ -0.97
VPS53-203ENST00000401468 BEND6Q5SZJ8 279 aaPredicted RBP9□□□□□ -0.97
VPS53-203ENST00000401468 CNSTQ6PJW8 725 aa9□□□□□ -0.97
VPS53-203ENST00000401468 WASH2PQ6VEQ5 465 aa9□□□□□ -0.97
VPS53-203ENST00000401468 TAS2R42Q7RTR8 314 aa9□□□□□ -0.97
VPS53-203ENST00000401468 NRROSQ86YC3 692 aa9□□□□□ -0.97
VPS53-203ENST00000401468 CLDN19Q8N6F1 224 aa9□□□□□ -0.97
VPS53-203ENST00000401468 OR2L2Q8NH16 312 aa9□□□□□ -0.97
VPS53-203ENST00000401468 PATE1Q8WXA2 126 aa9□□□□□ -0.97
VPS53-203ENST00000401468 KCNJ9Q92806 393 aa9□□□□□ -0.97
VPS53-203ENST00000401468 ISL2Q96A47 359 aa9□□□□□ -0.97
VPS53-203ENST00000401468 SGF29Q96ES7 293 aa9□□□□□ -0.97
VPS53-203ENST00000401468 DCUN1D1Q96GG9 259 aa9□□□□□ -0.97
VPS53-203ENST00000401468 OR2M4Q96R27 311 aa9□□□□□ -0.97
VPS53-203ENST00000401468 GPR22Q99680 433 aa9□□□□□ -0.97
VPS53-203ENST00000401468 RBBP8Q99708 897 aa9□□□□□ -0.97
VPS53-203ENST00000401468 AARSD1Q9BTE6 412 aaKnown RBP9□□□□□ -0.97
VPS53-203ENST00000401468 TMEM109Q9BVC6 243 aa9□□□□□ -0.97
VPS53-203ENST00000401468 RHOJQ9H4E5 214 aa9□□□□□ -0.97
VPS53-203ENST00000401468 VPS37BQ9H9H4 285 aa9□□□□□ -0.97
VPS53-203ENST00000401468 PPCSQ9HAB8 311 aa9□□□□□ -0.97
VPS53-203ENST00000401468 CYP4F12Q9HCS2 524 aa9□□□□□ -0.97
VPS53-203ENST00000401468 ARFGAP3Q9NP61 516 aa9□□□□□ -0.97
VPS53-203ENST00000401468 WASH6PQ9NQA3 447 aa9□□□□□ -0.97
VPS53-203ENST00000401468 CAMSAP3Q9P1Y5 1249 aaPredicted RBP9□□□□□ -0.97
VPS53-203ENST00000401468 GNPTGQ9UJJ9 305 aa9□□□□□ -0.97
VPS53-203ENST00000401468 PADI4Q9UM07 663 aa9□□□□□ -0.97
VPS53-203ENST00000401468 ENTPD2Q9Y5L3 495 aa9□□□□□ -0.97
VPS53-203ENST00000401468 NFS1Q9Y697 457 aa9□□□□□ -0.97
VPS53-203ENST00000401468 CSNK1G3Q9Y6M4 447 aa9□□□□□ -0.97
VPS53-203ENST00000401468 TNRC6AQ8NDV7 1962 aaKnown RBP9□□□□□ -0.97
VPS53-203ENST00000401468 ANKRD12Q6UB98 2062 aa9□□□□□ -0.97
VPS53-203ENST00000401468 CFAP46Q8IYW2 2715 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 TEP1Q99973 2627 aaKnown RBP8.99□□□□□ -0.97
VPS53-203ENST00000401468 TRBV23OR9-2A0A075B6M9 112 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 MGAT4DA6NG13 374 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 F8W8V4 182 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 NDUFS3O75489 264 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 FAM155BO75949 473 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 TNFP01375 233 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 FTH1P02794 183 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 OR56A5P0C7T3 313 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 PKMP14618 531 aaKnown RBP8.99□□□□□ -0.97
VPS53-203ENST00000401468 AOAHP28039 575 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 CD151P48509 253 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 CLCN7P51798 805 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 LIMK2P53671 638 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 MAZP56270 477 aaKnown RBP8.99□□□□□ -0.97
VPS53-203ENST00000401468 VAC14Q08AM6 782 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 GTF2H3Q13889 308 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 RTP5Q14D33 572 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 ISXQ2M1V0 245 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 TBC1D25Q3MII6 688 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 GRTP1Q5TC63 336 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 ARHGAP40Q5TG30 622 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 AGAP9Q5VTM2 703 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 METRNLQ641Q3 311 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 LVRNQ6Q4G3 990 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 TMEM220Q6QAJ8 160 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 LRRC69Q6ZNQ3 347 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 CAPN12Q6ZSI9 719 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 TMPRSS9Q7Z410 1059 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 STRA8Q7Z7C7 330 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 TAF8Q7Z7C8 310 aa8.99□□□□□ -0.97
VPS53-203ENST00000401468 C17orf82Q86X59 251 aaPredicted RBP8.99□□□□□ -0.97
VPS53-203ENST00000401468 ZNF761Q86XN6 746 aaPredicted RBP8.99□□□□□ -0.97
VPS53-203ENST00000401468 TDRPQ86YL5 185 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms