RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 SLC7A8Q9UHI5 535 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 PPM1HQ9ULR3 514 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 GSTA4O15217 222 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 CYP7B1O75881 506 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 IFNA16P05015 189 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 LTBRP36941 435 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 CCNFP41002 786 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 PTGER3P43115 390 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 RHBDD1Q8TEB9 315 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 FOXJ1Q92949 421 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 MGME1Q9BQP7 344 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 PREBQ9HCU5 417 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 S100A14Q9HCY8 104 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 LHX3Q9UBR4 397 aa10.11□□□□□ -0.79
COL6A3-205ENST00000392004 POM121BA6NF01 834 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 SPTBP11277 2137 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 CD6P30203 668 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 TMEM259Q4ZIN3 620 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 TMEM215Q68D42 235 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 ZNF783Q6ZMS7 281 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 UBE2Q1Q7Z7E8 422 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 ARRDC2Q8TBH0 407 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 DCAKDQ8WVC6 231 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 NUSAP1Q9BXS6 441 aaKnown RBP10.1□□□□□ -0.79
COL6A3-205ENST00000392004 KCNK13Q9HB14 408 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.1□□□□□ -0.79
COL6A3-205ENST00000392004 HCN4Q9Y3Q4 1203 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 NTRK1P04629 796 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 CHN2P52757 468 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 BST1Q10588 318 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 MTAPQ13126 283 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 TMED1Q13445 227 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 PDK3Q15120 406 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 CYP2A13Q16696 494 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 CLEC6AQ6EIG7 209 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 KIAA0930Q6ICG6 404 aaPredicted RBP10.1□□□□□ -0.79
COL6A3-205ENST00000392004 RTL10Q7L3V2 364 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 C17orf64Q86WR6 236 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 MRGPRX1Q96LB2 322 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 SLC6A18Q96N87 628 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 PARVBQ9HBI1 364 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 LTB4R2Q9NPC1 389 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 MIEF1Q9NQG6 463 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 K7ESM1 405 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 HNRNPRO43390 633 aaKnown RBP10.1□□□□□ -0.79
COL6A3-205ENST00000392004 ZNF217O75362 1048 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 GSRP00390 522 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 PABPC4LP0CB38 370 aaKnown RBP10.1□□□□□ -0.79
COL6A3-205ENST00000392004 TSHRP16473 764 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 CYLC2Q14093 348 aaPredicted RBP10.1□□□□□ -0.79
COL6A3-205ENST00000392004 LDLRAP1Q5SW96 308 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 FAAH2Q6GMR7 532 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 RANBP10Q6VN20 620 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 ADAMTSL2Q86TH1 951 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 SLC44A1Q8WWI5 657 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 DGCR14Q96DF8 476 aaKnown RBP10.1□□□□□ -0.79
COL6A3-205ENST00000392004 WDR92Q96MX6 357 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 CATSPER2Q96P56 530 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 WDR41Q9HAD4 459 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 CD93Q9NPY3 652 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 PRDM8Q9NQV8 689 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 SERGEFQ9UGK8 458 aa10.1□□□□□ -0.79
COL6A3-205ENST00000392004 CAPN8A6NHC0 703 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 OR1F1O43749 312 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 KLHL2O95198 593 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 MPOP05164 745 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 LINC00032P0C843 101 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 ALPPL2P10696 532 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 HNRNPA2B1P22626 353 aaKnown RBP10.09□□□□□ -0.79
COL6A3-205ENST00000392004 GGT5P36269 586 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 XIAPP98170 497 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 TREML1Q86YW5 311 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 ADHFE1Q8IWW8 467 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 RNF168Q8IYW5 571 aaPredicted RBP10.09□□□□□ -0.79
COL6A3-205ENST00000392004 RBBP8Q99708 897 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 DNAAF2Q9NVR5 837 aaKnown RBP10.09□□□□□ -0.79
COL6A3-205ENST00000392004 PRR5-ARHGAP8B1AHC4 643 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 KRT6AP02538 564 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 ESR1P03372 595 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 KRT6BP04259 564 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 HMGCLP35914 325 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 SLC1A6P48664 564 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 KRT6CP48668 564 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 CTSCP53634 463 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 MRPS21P82921 87 aaKnown RBP10.09□□□□□ -0.79
COL6A3-205ENST00000392004 ARHGAP8P85298 464 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 ACSM2AQ08AH3 577 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 PTK2BQ14289 1009 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 PRSS36Q5K4E3 855 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 LPCAT4Q643R3 524 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 FAM91A1Q658Y4 838 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 ACSM2BQ68CK6 577 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 B3GNT6Q6ZMB0 384 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 CYP4V2Q6ZWL3 525 aaPredicted RBP10.09□□□□□ -0.79
COL6A3-205ENST00000392004 FSTL5Q8N475 847 aaPredicted RBP10.09□□□□□ -0.79
COL6A3-205ENST00000392004 POU5F2Q8N7G0 328 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 CEP70Q8NHQ1 597 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 AARSD1Q9BTE6 412 aaKnown RBP10.09□□□□□ -0.79
COL6A3-205ENST00000392004 TM7SF3Q9NS93 570 aa10.09□□□□□ -0.79
COL6A3-205ENST00000392004 THAP10Q9P2Z0 257 aaPredicted RBP10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms