RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 SLC52A3Q9NQ40 469 aa8.54□□□□□ -1.04
SNRNP40-202ENST00000373720 ITM2CQ9NQX7 267 aa8.54□□□□□ -1.04
SNRNP40-202ENST00000373720 C1orf109Q9NX04 203 aa8.54□□□□□ -1.04
SNRNP40-202ENST00000373720 DUS2Q9NX74 493 aaKnown RBP8.54□□□□□ -1.04
SNRNP40-202ENST00000373720 SIRT5Q9NXA8 310 aa8.54□□□□□ -1.04
SNRNP40-202ENST00000373720 ARL15Q9NXU5 204 aa8.54□□□□□ -1.04
SNRNP40-202ENST00000373720 THEGQ9P2T0 379 aa8.54□□□□□ -1.04
SNRNP40-202ENST00000373720 B4GALT6Q9UBX8 382 aa8.54□□□□□ -1.04
SNRNP40-202ENST00000373720 PPM1HQ9ULR3 514 aa8.54□□□□□ -1.04
SNRNP40-202ENST00000373720 PPT2Q9UMR5 302 aa8.54□□□□□ -1.04
SNRNP40-202ENST00000373720 CORO2BQ9UQ03 480 aa8.54□□□□□ -1.04
SNRNP40-202ENST00000373720 PCDHB3Q9Y5E6 796 aa8.54□□□□□ -1.04
SNRNP40-202ENST00000373720 PCDHA9Q9Y5H5 950 aa8.54□□□□□ -1.04
SNRNP40-202ENST00000373720 SNX13Q9Y5W8 968 aa8.54□□□□□ -1.04
SNRNP40-202ENST00000373720 ACTL7AQ9Y615 435 aa8.54□□□□□ -1.04
SNRNP40-202ENST00000373720 GMEB1Q9Y692 573 aa8.54□□□□□ -1.04
SNRNP40-202ENST00000373720 SMIM31A0A1B0GVY4 71 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 LINC01553A4QN01 128 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 C1QTNF3-AMACRE9PGA6 284 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 H0YIV9 168 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 OR7A17O14581 309 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 WNT9AO14904 365 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 PSIP1O75475 530 aaKnown RBP8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 SMNDC1O75940 238 aaKnown RBP eCLIP8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 MYO1DO94832 1006 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 OR4F21O95013 312 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 KCNH1O95259 989 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 RPN2P04844 631 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 UGT2B4P06133 528 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 CISD3P0C7P0 127 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 SPATA31D3P0C874 917 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 ACRP10323 421 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 SYN1P17600 705 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 XRCC1P18887 633 aaPredicted RBP8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 PRPS1L1P21108 318 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 FASP25445 335 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 ITGB8P26012 769 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 ASMTP46597 345 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 SLC6A12P48065 614 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 TRPC1P48995 793 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 PRLHRP49683 370 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 CDKN1CP49918 316 aaPredicted RBP8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 RPS6KA3P51812 740 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 ERVK-21P61565 698 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 BIRC2Q13490 618 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 NFYCQ13952 458 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 MYBPC3Q14896 1274 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 AGERQ15109 404 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 DHCR24Q15392 516 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 TLR1Q15399 786 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 NR6A1Q15406 480 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 ATP13A5Q4VNC0 1218 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 TMTC4Q5T4D3 741 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 PPP4R4Q6NUP7 873 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 SPATA31D4Q6ZUB0 917 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 UBE2R2Q712K3 238 aaPredicted RBP8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 TECPR1Q7Z6L1 1165 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 SLC15A3Q8IY34 581 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 TRPV3Q8NET8 790 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 VPS37AQ8NEZ2 397 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 PROKR1Q8TCW9 393 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 BPIFB1Q8TDL5 484 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 SETD7Q8WTS6 366 aaKnown RBP8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 SMARCD2Q92925 531 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 GLYATL1Q969I3 302 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 EME1Q96AY2 570 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 TMEM159Q96B96 161 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 MARK4Q96L34 752 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 MRGPRX3Q96LB0 322 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 PPP1R36Q96LQ0 422 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 KLHL32Q96NJ5 620 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 PRPF18Q99633 342 aaKnown RBP8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 LBHD1Q9BQE6 289 aaPredicted RBP8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 CENPKQ9BS16 269 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 C17orf80Q9BSJ5 609 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 CCM2Q9BSQ5 444 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 BDH2Q9BUT1 245 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 SPATA16Q9BXB7 569 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 HDAC8Q9BY41 377 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 TNKS2Q9H2K2 1166 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 ALG2Q9H553 416 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 ELOVL6Q9H5J4 265 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 CXorf56Q9H5V9 222 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 ACTR8Q9H981 624 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 PIDD1Q9HB75 910 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 DYRK4Q9NR20 520 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 DNAJC11Q9NVH1 559 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 ELOVL2Q9NXB9 296 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 MAP10Q9P2G4 905 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 DEC1Q9P2X7 70 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 EIF2B4Q9UI10 523 aaKnown RBP8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 RIMS3Q9UJD0 308 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 FIS1Q9Y3D6 152 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 CCL27Q9Y4X3 112 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 PCDHGA11Q9Y5H2 935 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 WASF2Q9Y6W5 498 aa8.53□□□□□ -1.04
SNRNP40-202ENST00000373720 ATP6AP2A0A1C7CYW4 349 aa8.52□□□□□ -1.05
SNRNP40-202ENST00000373720 DHRS12A0PJE2 317 aa8.52□□□□□ -1.05
SNRNP40-202ENST00000373720 PRORSD1PA6NEY8 169 aa8.52□□□□□ -1.05
SNRNP40-202ENST00000373720 NR5A2O00482 541 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms