RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 HIST1H2AGP0C0S8 130 aaPredicted RBP13.45□□□□□ -0.26
PTPRF-202ENST00000372405 C7P10643 843 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 HIST1H2ADP20671 130 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 CD72P21854 359 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 BDKRB1P46663 353 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 AP1S2P56377 157 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 MRPS21P82921 87 aaKnown RBP13.45□□□□□ -0.26
PTPRF-202ENST00000372405 CDC16Q13042 620 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 CCINQ13939 588 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 SQLEQ14534 574 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 INPP5AQ14642 412 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 PTCHD3Q3KNS1 767 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 PLA2G4EQ3MJ16 856 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 NEK5Q6P3R8 708 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 DOK6Q6PKX4 331 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 TMEM92Q6UXU6 159 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 FAM83HQ6ZRV2 1179 aaPredicted RBP13.45□□□□□ -0.26
PTPRF-202ENST00000372405 GK5Q6ZS86 529 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 Q6ZSR9 355 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 MILR1Q7Z6M3 343 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 RPLP0P6Q8NHW5 317 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 RP9Q8TA86 221 aaKnown RBP13.45□□□□□ -0.26
PTPRF-202ENST00000372405 METTL6Q8TCB7 284 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 MCOLN3Q8TDD5 553 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 GANCQ8TET4 914 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 TUBGCP3Q96CW5 907 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 CLPTM1LQ96KA5 538 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 HIST1H2AHQ96KK5 128 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 HBEGFQ99075 208 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 HIST1H2AJQ99878 128 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 H2AFJQ9BTM1 129 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 NTMT1Q9BV86 223 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 TEX101Q9BY14 249 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 TRIM54Q9BYV2 358 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 SLC32A1Q9H598 525 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 FBRSQ9HAH7 460 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 GPR34Q9UPC5 381 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 OR1A2Q9Y585 309 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 A0A1W2PQU0 124 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 LOC730098B7Z3J9 87 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 LIN7AO14910 233 aaPredicted RBP13.45□□□□□ -0.26
PTPRF-202ENST00000372405 PRAMEF4O60810 478 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 THRAP10827 490 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 EPB42P16452 691 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 ITGAXP20702 1163 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 TRIM23P36406 574 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 ARL1P40616 181 aaPredicted RBP13.45□□□□□ -0.26
PTPRF-202ENST00000372405 RGS19P49795 217 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 HNMTP50135 292 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 MNAT1P51948 309 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 MXRA7P84157 204 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 CUL3Q13618 768 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 GTF2H3Q13889 308 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 CYLC2Q14093 348 aaPredicted RBP13.45□□□□□ -0.26
PTPRF-202ENST00000372405 NFE2L1Q14494 772 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 HERC3Q15034 1050 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 SLC44A4Q53GD3 710 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 PRAMEF9Q5VWM5 478 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 PLCD3Q8N3E9 789 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 TCAIMQ8N3R3 496 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 OR9I1Q8NGQ6 314 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 ATP6V1E2Q96A05 226 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 FBXL8Q96CD0 374 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 ZNF514Q96K75 400 aaPredicted RBP13.45□□□□□ -0.26
PTPRF-202ENST00000372405 MRGPRX1Q96LB2 322 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 RTKNQ9BST9 563 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 ATG10Q9H0Y0 220 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 SLC23A2Q9UGH3 650 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 CIDEBQ9UHD4 219 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 RNF11Q9Y3C5 154 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 ANGPTL3Q9Y5C1 460 aa13.45□□□□□ -0.26
PTPRF-202ENST00000372405 C17orf113A0A1B0GUU1 675 aa13.44□□□□□ -0.26
PTPRF-202ENST00000372405 H3BM21 787 aa13.44□□□□□ -0.26
PTPRF-202ENST00000372405 RNGTTO60942 597 aaKnown RBP13.44□□□□□ -0.26
PTPRF-202ENST00000372405 PEX11AO75192 247 aa13.44□□□□□ -0.26
PTPRF-202ENST00000372405 CHEK2O96017 543 aa13.44□□□□□ -0.26
PTPRF-202ENST00000372405 HGFP14210 728 aa13.44□□□□□ -0.26
PTPRF-202ENST00000372405 LBPP18428 481 aa13.44□□□□□ -0.26
PTPRF-202ENST00000372405 GPX3P22352 226 aa13.44□□□□□ -0.26
PTPRF-202ENST00000372405 PGM1P36871 562 aa13.44□□□□□ -0.26
PTPRF-202ENST00000372405 PIK3CGP48736 1102 aa13.44□□□□□ -0.26
PTPRF-202ENST00000372405 PFN3P60673 137 aa13.44□□□□□ -0.26
PTPRF-202ENST00000372405 PPP2CBP62714 309 aa13.44□□□□□ -0.26
PTPRF-202ENST00000372405 RPS21P63220 83 aaKnown RBP13.44□□□□□ -0.26
PTPRF-202ENST00000372405 PPP2CAP67775 309 aa13.44□□□□□ -0.26
PTPRF-202ENST00000372405 ABRAXAS2Q15018 415 aa13.44□□□□□ -0.26
PTPRF-202ENST00000372405 OGFOD2Q6N063 350 aa13.44□□□□□ -0.26
PTPRF-202ENST00000372405 LRRC70Q7Z2Q7 622 aa13.44□□□□□ -0.26
PTPRF-202ENST00000372405 EFL1Q7Z2Z2 1120 aaKnown RBP13.44□□□□□ -0.26
PTPRF-202ENST00000372405 TRMT11Q7Z4G4 463 aaKnown RBP13.44□□□□□ -0.26
PTPRF-202ENST00000372405 FUNDC1Q8IVP5 155 aa13.44□□□□□ -0.26
PTPRF-202ENST00000372405 PARP9Q8IXQ6 854 aa13.44□□□□□ -0.26
PTPRF-202ENST00000372405 OR2L2Q8NH16 312 aa13.44□□□□□ -0.26
PTPRF-202ENST00000372405 MCUR1Q96AQ8 359 aa13.44□□□□□ -0.26
PTPRF-202ENST00000372405 SIPA1Q96FS4 1042 aa13.44□□□□□ -0.26
PTPRF-202ENST00000372405 MMADHCQ9H3L0 296 aaPredicted RBP13.44□□□□□ -0.26
PTPRF-202ENST00000372405 DENND2DQ9H6A0 471 aaPredicted RBP13.44□□□□□ -0.26
PTPRF-202ENST00000372405 TM7SF3Q9NS93 570 aa13.44□□□□□ -0.26
PTPRF-202ENST00000372405 CCL27Q9Y4X3 112 aa13.44□□□□□ -0.26
PTPRF-202ENST00000372405 A0A088AWK7 358 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms