RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 KCTD5Q9NXV2 234 aa12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 PADI4Q9UM07 663 aa12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 NDRG2Q9UN36 371 aaKnown RBP12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 DHRS7Q9Y394 339 aa12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 AP4S1Q9Y587 144 aa12.91□□□□□ -0.34
SQSTM1-201ENST00000360718 A0A1W2PP55 124 aa12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 A8MT66 165 aa12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 TMEM233B4DJY2 109 aa12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 TSPAN6O43657 245 aa12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 MMP20O60882 483 aa12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 TRIM16O95361 564 aa12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 DNTTP04053 509 aa12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 SNRPB2P08579 225 aaKnown RBP12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 OR56A5P0C7T3 313 aa12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 SMIM18P0DKX4 95 aa12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 C6P13671 934 aa12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 TCN1P20061 433 aaPredicted RBP12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 INHBCP55103 352 aa12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 LDLRAP1Q5SW96 308 aa12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 GPRC6AQ5T6X5 926 aa12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 TMEM92Q6UXU6 159 aa12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 GK5Q6ZS86 529 aa12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 ZNF765Q7L2R6 523 aa12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 CUZD1Q86UP6 607 aa12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 HOMEZQ8IX15 550 aa12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 LILRA2Q8N149 483 aa12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 TMEM102Q8N9M5 508 aaPredicted RBP12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 SIDT2Q8NBJ9 832 aaKnown RBP12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 LKAAEAR1Q8TD35 194 aa12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 EME1Q96AY2 570 aa12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 NUS1Q96E22 293 aa12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 DERL2Q9GZP9 239 aa12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 THEGQ9P2T0 379 aa12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 PCDHGA7Q9Y5G6 932 aa12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 FADS3Q9Y5Q0 445 aa12.9□□□□□ -0.34
SQSTM1-201ENST00000360718 ARHGAP10A1A4S6 786 aa12.9□□□□□ -0.35
SQSTM1-201ENST00000360718 RNASEH2AO75792 299 aaKnown RBP12.9□□□□□ -0.35
SQSTM1-201ENST00000360718 RECQL5O94762 991 aaPredicted RBP12.9□□□□□ -0.35
SQSTM1-201ENST00000360718 PCDH8O95206 1070 aa12.9□□□□□ -0.35
SQSTM1-201ENST00000360718 SLC25A14O95258 325 aaPredicted RBP12.9□□□□□ -0.35
SQSTM1-201ENST00000360718 PGM3O95394 542 aa12.9□□□□□ -0.35
SQSTM1-201ENST00000360718 C8BP07358 591 aa12.9□□□□□ -0.35
SQSTM1-201ENST00000360718 CD1DP15813 335 aa12.9□□□□□ -0.35
SQSTM1-201ENST00000360718 MSH3P20585 1137 aa12.9□□□□□ -0.35
SQSTM1-201ENST00000360718 RGS4P49798 205 aa12.9□□□□□ -0.35
SQSTM1-201ENST00000360718 RPS6KA3P51812 740 aa12.9□□□□□ -0.35
SQSTM1-201ENST00000360718 RHDQ02161 417 aa12.9□□□□□ -0.35
SQSTM1-201ENST00000360718 SFSWAPQ12872 951 aaKnown RBP12.9□□□□□ -0.35
SQSTM1-201ENST00000360718 LRP8Q14114 963 aa12.9□□□□□ -0.35
SQSTM1-201ENST00000360718 AGKQ53H12 422 aa12.9□□□□□ -0.35
SQSTM1-201ENST00000360718 EOGTQ5NDL2 527 aa12.9□□□□□ -0.35
SQSTM1-201ENST00000360718 Q6ZS52 159 aa12.9□□□□□ -0.35
SQSTM1-201ENST00000360718 GALNT4Q8N4A0 578 aa12.9□□□□□ -0.35
SQSTM1-201ENST00000360718 CD200R1Q8TD46 325 aa12.9□□□□□ -0.35
SQSTM1-201ENST00000360718 FUBP1Q96AE4 644 aaKnown RBP12.9□□□□□ -0.35
SQSTM1-201ENST00000360718 VPS35Q96QK1 796 aa12.9□□□□□ -0.35
SQSTM1-201ENST00000360718 ALG9Q9H6U8 611 aa12.9□□□□□ -0.35
SQSTM1-201ENST00000360718 SPAG4Q9NPE6 437 aa12.9□□□□□ -0.35
SQSTM1-201ENST00000360718 CD93Q9NPY3 652 aa12.9□□□□□ -0.35
SQSTM1-201ENST00000360718 UBAP1Q9NZ09 502 aa12.9□□□□□ -0.35
SQSTM1-201ENST00000360718 PTTG2Q9NZH5 202 aa12.9□□□□□ -0.35
SQSTM1-201ENST00000360718 DUSP12Q9UNI6 340 aa12.9□□□□□ -0.35
SQSTM1-201ENST00000360718 FIS1Q9Y3D6 152 aa12.9□□□□□ -0.35
SQSTM1-201ENST00000360718 IGLV3-16A0A075B6K0 115 aa12.89□□□□□ -0.35
SQSTM1-201ENST00000360718 K7ESM1 405 aa12.89□□□□□ -0.35
SQSTM1-201ENST00000360718 MAN2B1O00754 1011 aa12.89□□□□□ -0.35
SQSTM1-201ENST00000360718 MTX2O75431 263 aa12.89□□□□□ -0.35
SQSTM1-201ENST00000360718 SOD1P00441 154 aa12.89□□□□□ -0.35
SQSTM1-201ENST00000360718 TFAP2AP05549 437 aa12.89□□□□□ -0.35
SQSTM1-201ENST00000360718 IMPDH1P20839 514 aa12.89□□□□□ -0.35
SQSTM1-201ENST00000360718 ATP4BP51164 291 aa12.89□□□□□ -0.35
SQSTM1-201ENST00000360718 CLCN7P51798 805 aa12.89□□□□□ -0.35
SQSTM1-201ENST00000360718 STX1BP61266 288 aa12.89□□□□□ -0.35
SQSTM1-201ENST00000360718 TTLL9Q3SXZ7 439 aa12.89□□□□□ -0.35
SQSTM1-201ENST00000360718 SAMD4BQ5PRF9 694 aaKnown RBP12.89□□□□□ -0.35
SQSTM1-201ENST00000360718 REP15Q6BDI9 236 aa12.89□□□□□ -0.35
SQSTM1-201ENST00000360718 HACD2Q6Y1H2 254 aa12.89□□□□□ -0.35
SQSTM1-201ENST00000360718 ISCA2Q86U28 154 aa12.89□□□□□ -0.35
SQSTM1-201ENST00000360718 BTN2A2Q8WVV5 523 aa12.89□□□□□ -0.35
SQSTM1-201ENST00000360718 GLYATL1Q969I3 302 aa12.89□□□□□ -0.35
SQSTM1-201ENST00000360718 LINGO1Q96FE5 620 aa12.89□□□□□ -0.35
SQSTM1-201ENST00000360718 DUS3LQ96G46 650 aaKnown RBP12.89□□□□□ -0.35
SQSTM1-201ENST00000360718 ASB2Q96Q27 587 aa12.89□□□□□ -0.35
SQSTM1-201ENST00000360718 TFB2MQ9H5Q4 396 aaKnown RBP12.89□□□□□ -0.35
SQSTM1-201ENST00000360718 CYP4F12Q9HCS2 524 aa12.89□□□□□ -0.35
SQSTM1-201ENST00000360718 FBXL12Q9NXK8 326 aa12.89□□□□□ -0.35
SQSTM1-201ENST00000360718 CROTQ9UKG9 612 aa12.89□□□□□ -0.35
SQSTM1-201ENST00000360718 CA14Q9ULX7 337 aa12.89□□□□□ -0.35
SQSTM1-201ENST00000360718 SCML1Q9UN30 329 aa12.89□□□□□ -0.35
SQSTM1-201ENST00000360718 TRAF6Q9Y4K3 522 aa12.89□□□□□ -0.35
SQSTM1-201ENST00000360718 NEMP2A6NFY4 417 aa12.88□□□□□ -0.35
SQSTM1-201ENST00000360718 QSOX1O00391 747 aa12.88□□□□□ -0.35
SQSTM1-201ENST00000360718 ATP1B2P14415 290 aaPredicted RBP12.88□□□□□ -0.35
SQSTM1-201ENST00000360718 ACADVLP49748 655 aa12.88□□□□□ -0.35
SQSTM1-201ENST00000360718 ATXN3P54252 364 aaPredicted RBP12.88□□□□□ -0.35
SQSTM1-201ENST00000360718 CREB5Q02930 508 aa12.88□□□□□ -0.35
SQSTM1-201ENST00000360718 ZP2Q05996 745 aa12.88□□□□□ -0.35
SQSTM1-201ENST00000360718 MLF2Q15773 248 aaPredicted RBP12.88□□□□□ -0.35
SQSTM1-201ENST00000360718 MAP7D1Q3KQU3 841 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms