RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 LAPTM5Q13571 262 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 LRRC55Q6ZSA7 311 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 ZNF614Q8N883 585 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 FCAMRQ8WWV6 532 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 KCNS3Q9BQ31 491 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 STARD7Q9NQZ5 370 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 PSMA6P60900 246 aaKnown RBP12.42□□□□□ -0.42
COL6A3-203ENST00000353578 SMARCB1Q12824 385 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 GRM3Q14832 879 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 HLA-DQA1Q5Y7H0 255 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 UNC5AQ6ZN44 842 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 RBFAQ8N0V3 343 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 RRNAD1Q96FB5 475 aaKnown RBP12.42□□□□□ -0.42
COL6A3-203ENST00000353578 PPM1HQ9ULR3 514 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 GCATO75600 419 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 SLC25A12O75746 678 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 COTL1Q14019 142 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 IFI44LQ53G44 452 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 RPL13AP3Q6NVV1 102 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 CBWD1Q9BRT8 395 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 CEP41Q9BYV8 373 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 POPDC2Q9HBU9 364 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 ATP13A1Q9HD20 1204 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 EXOSC1Q9Y3B2 195 aaKnown RBP12.42□□□□□ -0.42
COL6A3-203ENST00000353578 TMEM2Q9UHN6 1383 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 NME6O75414 186 aaPredicted RBP12.42□□□□□ -0.42
COL6A3-203ENST00000353578 LHCGRP22888 699 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 BUD31P41223 144 aaPredicted RBP12.42□□□□□ -0.42
COL6A3-203ENST00000353578 UNC93AQ86WB7 457 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 HAPLN3Q96S86 360 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 TOR3AQ9H497 397 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 KCNH7Q9NS40 1196 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 GJA1P17302 382 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 FPR1P21462 350 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 MIIPQ5JXC2 388 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 METTL11BQ5VVY1 283 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 RFWD3Q6PCD5 774 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 ANGPTL6Q8NI99 470 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 TBATAQ96M53 351 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 DUSP9Q99956 384 aaKnown RBP12.42□□□□□ -0.42
COL6A3-203ENST00000353578 IGKV5-2P06315 115 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 SV2AQ7L0J3 742 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 CEP97Q8IW35 865 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 TNS4Q8IZW8 715 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 ARL14Q8N4G2 192 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 ANKFN1Q8N957 763 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 FAM98AQ8NCA5 519 aaKnown RBP12.42□□□□□ -0.42
COL6A3-203ENST00000353578 GALNT11Q8NCW6 608 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 TXN2Q99757 166 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 MAF1Q9H063 256 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 ZBTB26Q9HCK0 441 aa12.42□□□□□ -0.42
COL6A3-203ENST00000353578 TCP10L2B9ZVM9 353 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 BOLA2-SMG1P6H3BVE0 249 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 GADD45AP24522 165 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 DENND1CQ8IV53 801 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 ADAM12O43184 909 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 NOS2P35228 1153 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 PEX6Q13608 980 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 C4orf19Q8IY42 314 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 VWA5B2Q8N398 1253 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 DUSP16Q9BY84 665 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 COMMD3Q9UBI1 195 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 RHPN2P1A8MT19 583 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 ISM1B1AKI9 464 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 CHRNB1P11230 501 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 CAPN3P20807 821 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 ERVK-8P63133 956 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 IRF8Q02556 426 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 C15orf52Q6ZUT6 534 aaKnown RBP12.41□□□□□ -0.42
COL6A3-203ENST00000353578 SNX20Q7Z614 316 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 LDHDQ86WU2 507 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 ADGRF2Q8IZF7 708 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 SEMA4DQ92854 862 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 PPCDCQ96CD2 204 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 CHFRQ96EP1 664 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 PLEKHA1Q9HB21 404 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 ZMAT5Q9UDW3 170 aaKnown RBP12.41□□□□□ -0.42
COL6A3-203ENST00000353578 SCN4AP35499 1836 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 EME2A4GXA9 379 aaPredicted RBP12.41□□□□□ -0.42
COL6A3-203ENST00000353578 LTFP02788 710 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 CACNB2Q08289 660 aaPredicted RBP12.41□□□□□ -0.42
COL6A3-203ENST00000353578 ZNF484Q5JVG2 852 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 SLC35F1Q5T1Q4 408 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 OR13J1Q8NGT2 312 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 NKX1-2Q9UD57 310 aaPredicted RBP12.41□□□□□ -0.42
COL6A3-203ENST00000353578 OR3A3P47888 321 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 OR3A2P47893 321 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 BLOC1S1P78537 153 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 PPATQ06203 517 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 NIPAL4Q0D2K0 466 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 SLC22A8Q8TCC7 542 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 ZMYM5Q9UJ78 669 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 VWDEQ8N2E2 1590 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 GXYLT2A0PJZ3 443 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 UBBP0CG47 229 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 UBCP0CG48 685 aaKnown RBP12.41□□□□□ -0.42
COL6A3-203ENST00000353578 TRAPPC2P0DI81 140 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 TRAPPC2BP0DI82 140 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 ETV5P41161 510 aa12.41□□□□□ -0.42
COL6A3-203ENST00000353578 CACNB3P54284 484 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms