RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 NSMCE2Q96MF7 247 aa10.13□□□□□ -0.79
LIMA1-201ENST00000341247 CHID1Q9BWS9 393 aa10.13□□□□□ -0.79
LIMA1-201ENST00000341247 IKZF5Q9H5V7 419 aa10.13□□□□□ -0.79
LIMA1-201ENST00000341247 AGPAT4Q9NRZ5 378 aa10.13□□□□□ -0.79
LIMA1-201ENST00000341247 PDE10AQ9Y233 779 aa10.13□□□□□ -0.79
LIMA1-201ENST00000341247 ABHD14A-ACY1A0A1B0GW23 586 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 H3BSA7 217 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 WDR47O94967 919 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 LATS1O95835 1130 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 GLUD1P00367 558 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 C1SP09871 688 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 VARSP26640 1264 aaKnown RBP10.12□□□□□ -0.79
LIMA1-201ENST00000341247 PBLDP30039 288 aaPredicted RBP10.12□□□□□ -0.79
LIMA1-201ENST00000341247 NSG1P42857 185 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 IST1P53990 364 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 LAPTM5Q13571 262 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 SF1Q15637 639 aaKnown RBP10.12□□□□□ -0.79
LIMA1-201ENST00000341247 FAM86B1Q8N7N1 296 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 LMNTD1Q8N9Z9 388 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 ZFP28Q8NHY6 868 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 HTATIP2Q9BUP3 242 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 LRRC3Q9BY71 257 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 ARMC1Q9NVT9 282 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 SLC25A13Q9UJS0 675 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 EIF3LQ9Y262 564 aaKnown RBP10.12□□□□□ -0.79
LIMA1-201ENST00000341247 GSTA4O15217 222 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 SOCS5O75159 536 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 ANXA5P08758 320 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 BMP2P12643 396 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 CD9P21926 228 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 RPS3P23396 243 aaKnown RBP eCLIP10.12□□□□□ -0.79
LIMA1-201ENST00000341247 ETV3P41162 512 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 YAP1P46937 504 aaKnown RBP10.12□□□□□ -0.79
LIMA1-201ENST00000341247 MAPKAPK3Q16644 382 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 ZXDCQ2QGD7 858 aaPredicted RBP10.12□□□□□ -0.79
LIMA1-201ENST00000341247 TTLL9Q3SXZ7 439 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 LY6G5CQ5SRR4 150 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 SULT1C3Q6IMI6 304 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 TBPL2Q6SJ96 375 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 GCNT7Q6ZNI0 430 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 ANKFN1Q8N957 763 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 TRPV3Q8NET8 790 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 SELENOMQ8WWX9 145 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 MPP4Q96JB8 637 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 ZBTB18Q99592 522 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 EBPLQ9BY08 206 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 SLC2A11Q9BYW1 496 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 ZBP1Q9H171 429 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 LIN28AQ9H9Z2 209 aaKnown RBP10.12□□□□□ -0.79
LIMA1-201ENST00000341247 LRTM1Q9HBL6 345 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 THEGQ9P2T0 379 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 UTS2RQ9UKP6 389 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 SLC22A14Q9Y267 594 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 TTC34A8MYJ7 566 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 MANBAO00462 879 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 RGS14O43566 566 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 PDYNP01213 254 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 TYRP14679 529 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 GNPDA1P46926 289 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 SLC7A9P82251 487 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 ABRQ12979 859 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 PGS1Q32NB8 556 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 PTCHD3Q3KNS1 767 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 CARD16Q5EG05 197 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 NHSL2Q5HYW2 709 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 PPP4R4Q6NUP7 873 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 CHST15Q7LFX5 561 aaPredicted RBP10.12□□□□□ -0.79
LIMA1-201ENST00000341247 LILRA3Q8N6C8 439 aaPredicted RBP10.12□□□□□ -0.79
LIMA1-201ENST00000341247 SLC13A3Q8WWT9 602 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 NCLNQ969V3 563 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 RMND5BQ96G75 393 aaPredicted RBP10.12□□□□□ -0.79
LIMA1-201ENST00000341247 CENPNQ96H22 339 aaPredicted RBP10.12□□□□□ -0.79
LIMA1-201ENST00000341247 EGLN2Q96KS0 407 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 UHRF1Q96T88 793 aaPredicted RBP10.12□□□□□ -0.79
LIMA1-201ENST00000341247 MRPS26Q9BYN8 205 aaKnown RBP10.12□□□□□ -0.79
LIMA1-201ENST00000341247 SLC6A13Q9NSD5 602 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 ZDHHC3Q9NYG2 299 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 TMPRSS11EQ9UL52 423 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 DLGAP4Q9Y2H0 992 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 MUC3AQ02505 3323 aa10.12□□□□□ -0.79
LIMA1-201ENST00000341247 TRBV5-4A0A0C4DH59 114 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 PABPN1LA6NDY0 278 aaKnown RBP10.11□□□□□ -0.79
LIMA1-201ENST00000341247 TMEM202A6NGA9 273 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 PARNO95453 639 aaKnown RBP10.11□□□□□ -0.79
LIMA1-201ENST00000341247 SNAP29O95721 258 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 CTSAP10619 480 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 PABPC1P11940 636 aaKnown RBP10.11□□□□□ -0.79
LIMA1-201ENST00000341247 TACR1P25103 407 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 MAPK8P45983 427 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 RECQLP46063 649 aaPredicted RBP10.11□□□□□ -0.79
LIMA1-201ENST00000341247 ARSIQ5FYB1 569 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 MACC1Q6ZN28 852 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 CARM1Q86X55 608 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 ELMO1Q92556 727 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 PPP3R2Q96LZ3 170 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 OR52E6Q96RD3 313 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 ADI1Q9BV57 179 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 SEZ6LQ9BYH1 1024 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 HEBP1Q9NRV9 189 aa10.11□□□□□ -0.79
LIMA1-201ENST00000341247 OLAHQ9NV23 265 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms