RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 TP53BP2Q13625 1128 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 HERC3Q15034 1050 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 TTLL9Q3SXZ7 439 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 BROXQ5VW32 411 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 BHLHA9Q7RTU4 235 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 GPR180Q86V85 440 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 TRAPPC5Q8IUR0 188 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 RELTQ969Z4 430 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 DEFB118Q96PH6 123 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 MRGBPQ9NV56 204 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 RHCGQ9UBD6 479 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.71□□□□□ -0.53
USP1-201ENST00000339950 CEPT1Q9Y6K0 416 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 LOXHD1Q8IVV2 1947 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 ANXA5P08758 320 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 ACRP10323 421 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 FCGR1AP12314 374 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 MTHFD2P13995 350 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 CD247P20963 164 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 PREPP48147 710 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 ZNF135P52742 658 aaPredicted RBP11.71□□□□□ -0.53
USP1-201ENST00000339950 YBEYP58557 167 aaPredicted RBP11.71□□□□□ -0.53
USP1-201ENST00000339950 VBP1P61758 197 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 OTOP2Q7RTS6 562 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 ADAMTSL2Q86TH1 951 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 RBM23Q86U06 439 aaKnown RBP11.71□□□□□ -0.53
USP1-201ENST00000339950 OR7A2PQ8NGA2 310 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 CYB5D2Q8WUJ1 264 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 MAL2Q969L2 176 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 UBE2FQ969M7 185 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 OSGEPL1Q9H4B0 414 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 ZNF696Q9H7X3 374 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 ABCB8Q9NUT2 735 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 ATAD3AQ9NVI7 634 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 TMEM248Q9NWD8 314 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 ACTR3BQ9P1U1 418 aa11.71□□□□□ -0.53
USP1-201ENST00000339950 IFRD1O00458 451 aaPredicted RBP11.71□□□□□ -0.54
USP1-201ENST00000339950 ALOX12P18054 663 aa11.71□□□□□ -0.54
USP1-201ENST00000339950 IL12AP29459 219 aa11.71□□□□□ -0.54
USP1-201ENST00000339950 SERPINB10P48595 397 aa11.71□□□□□ -0.54
USP1-201ENST00000339950 CHIT1Q13231 466 aa11.71□□□□□ -0.54
USP1-201ENST00000339950 BLOC1S3Q6QNY0 202 aa11.71□□□□□ -0.54
USP1-201ENST00000339950 Q6ZPB1 254 aaPredicted RBP11.71□□□□□ -0.54
USP1-201ENST00000339950 RGL4Q8IZJ4 473 aa11.71□□□□□ -0.54
USP1-201ENST00000339950 LKAAEAR1Q8TD35 194 aa11.71□□□□□ -0.54
USP1-201ENST00000339950 COPS8Q99627 209 aa11.71□□□□□ -0.54
USP1-201ENST00000339950 RAD21L1Q9H4I0 556 aa11.71□□□□□ -0.54
USP1-201ENST00000339950 TFB2MQ9H5Q4 396 aaKnown RBP11.71□□□□□ -0.54
USP1-201ENST00000339950 PRDM16Q9HAZ2 1276 aa11.71□□□□□ -0.54
USP1-201ENST00000339950 CCM2LQ9NUG4 571 aaPredicted RBP11.71□□□□□ -0.54
USP1-201ENST00000339950 SCN3BQ9NY72 215 aa11.71□□□□□ -0.54
USP1-201ENST00000339950 BLOC1S6Q9UL45 172 aa11.71□□□□□ -0.54
USP1-201ENST00000339950 PRSS21Q9Y6M0 314 aa11.71□□□□□ -0.54
USP1-201ENST00000339950 RBM47A0AV96 593 aaKnown RBP11.7□□□□□ -0.54
USP1-201ENST00000339950 DGKAP23743 735 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 WASP42768 502 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 SMN1Q16637 294 aaKnown RBP11.7□□□□□ -0.54
USP1-201ENST00000339950 SPDYE7PQ495Y7 208 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 CES5AQ6NT32 575 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 Q6ZVU0 165 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 CCDC80Q76M96 950 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 ADGRG5Q8IZF4 528 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 SMYD1Q8NB12 490 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 NSMCE3Q96MG7 304 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 INPP5KQ9BT40 448 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 UGT2B28Q9BY64 529 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 ZC4H2Q9NQZ6 224 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 VPS51Q9UID3 782 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 PER2O15055 1255 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 CLDN11O75508 207 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 MYO1DO94832 1006 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 ANGPTL1O95841 491 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 LRG1P02750 347 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 FDXRP22570 491 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 AZGP1P25311 298 aaKnown RBP11.7□□□□□ -0.54
USP1-201ENST00000339950 GRM2Q14416 872 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 GANABQ14697 944 aaKnown RBP11.7□□□□□ -0.54
USP1-201ENST00000339950 PCBP2Q15366 365 aaKnown RBP eCLIP11.7□□□□□ -0.54
USP1-201ENST00000339950 THAP5Q7Z6K1 395 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 HID1Q8IV36 788 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 OR4K1Q8NGD4 311 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 MCOLN3Q8TDD5 553 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 GTPBP3Q969Y2 492 aaKnown RBP11.7□□□□□ -0.54
USP1-201ENST00000339950 UBXN10Q96LJ8 280 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 LRRC3Q9BY71 257 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 OSBPL6Q9BZF3 934 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 VPS9D1Q9Y2B5 631 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 TBC1D30Q9Y2I9 924 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 MAP4K5Q9Y4K4 846 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 ARIH1Q9Y4X5 557 aaPredicted RBP11.7□□□□□ -0.54
USP1-201ENST00000339950 LTBP1Q14766 1721 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 CACNA1IQ9P0X4 2223 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 LCHNA4D1U4 455 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 TARM1B6A8C7 271 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 URODP06132 367 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 PGRP06401 933 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 MMP2P08253 660 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 JAK1P23458 1154 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 S100A5P33763 92 aa11.7□□□□□ -0.54
USP1-201ENST00000339950 GJA8P48165 433 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms