RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 GRIK4Q16099 956 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 RAET1GQ6H3X3 334 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 TM9SF2Q99805 663 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 ZIM2Q9NZV7 527 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 ERVK-11Q9UQG0 969 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 SPATA31A3Q5VYP0 1347 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 IFT172Q9UG01 1749 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 SPTBN1Q01082 2364 aaKnown RBP14.06□□□□□ -0.16
COL7A1-201ENST00000328333 ELFN1P0C7U0 828 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 PABPC4LP0CB38 370 aaKnown RBP14.06□□□□□ -0.16
COL7A1-201ENST00000328333 MLLT6P55198 1093 aaPredicted RBP14.06□□□□□ -0.16
COL7A1-201ENST00000328333 GABARAPL2P60520 117 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 SLC13A2Q13183 592 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 TATDN1Q6P1N9 297 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 VSTM1Q6UX27 236 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 FLRT1Q9NZU1 646 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 COPS7AQ9UBW8 275 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 DERAQ9Y315 318 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 ABCA1O95477 2261 aa14.06□□□□□ -0.16
COL7A1-201ENST00000328333 FXYD6-FXYD2A0A087WZ82 144 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 FADDQ13158 208 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 SEMA3AQ14563 771 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 SUSD6Q92537 303 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 FXYD6Q9H0Q3 95 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 MYOZ2Q9NPC6 264 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 SH3PXD2BA1X283 911 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 FCGRTP55899 365 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 SIM2Q14190 667 aaPredicted RBP14.05□□□□□ -0.16
COL7A1-201ENST00000328333 FNDC3BQ53EP0 1204 aaKnown RBP14.05□□□□□ -0.16
COL7A1-201ENST00000328333 ISLR2Q6UXK2 745 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 RGCCQ9H4X1 137 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 TM9SF3Q9HD45 589 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 HEBP2Q9Y5Z4 205 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 RENP00797 406 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 NADK2Q4G0N4 442 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 HID1Q8IV36 788 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 BANPQ8N9N5 519 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 VRK1Q99986 396 aaPredicted RBP14.05□□□□□ -0.16
COL7A1-201ENST00000328333 SNRNP25Q9BV90 132 aaKnown RBP14.05□□□□□ -0.16
COL7A1-201ENST00000328333 NUFIP1Q9UHK0 495 aaKnown RBP14.05□□□□□ -0.16
COL7A1-201ENST00000328333 HSD3B1P14060 373 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 PRKCDQ05655 676 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 DAG1Q14118 895 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 GPR158Q5T848 1215 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 ZFPM1Q8IX07 1006 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 CRYBG2Q8N1P7 616 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 LRRC52Q8N7C0 313 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 FOLH1BQ9HBA9 442 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 BRD7Q9NPI1 651 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 CYTH4Q9UIA0 394 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 ARHGAP23Q9P227 1491 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 CACNB4O00305 520 aaPredicted RBP14.05□□□□□ -0.16
COL7A1-201ENST00000328333 CDH12P55289 794 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 SH3PXD2AQ5TCZ1 1133 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 SH3RF1Q7Z6J0 888 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 PAQR7Q86WK9 346 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 TCTEX1D2Q8WW35 142 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 POTEKPQ9BYX7 375 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 PIH1D1Q9NWS0 290 aaKnown RBP14.05□□□□□ -0.16
COL7A1-201ENST00000328333 SOHLH2Q9NX45 425 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 AKAP6Q13023 2319 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 DUXAA6NLW8 204 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 CLUP10909 449 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 CAP2P40123 477 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 MAP3K8P41279 467 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 CRY2Q49AN0 593 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 OR2T5Q6IEZ7 315 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 OR2T29Q8NH02 315 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 LRTOMTQ8WZ04 291 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 SPON1Q9HCB6 807 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 RPA4Q13156 261 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 ZNF267Q14586 743 aaPredicted RBP14.05□□□□□ -0.16
COL7A1-201ENST00000328333 ZC3HC1Q86WB0 502 aaKnown RBP14.05□□□□□ -0.16
COL7A1-201ENST00000328333 SLCO2A1Q92959 643 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 AGO1Q9UL18 857 aaKnown RBP14.05□□□□□ -0.16
COL7A1-201ENST00000328333 UBR1Q8IWV7 1749 aa14.05□□□□□ -0.16
COL7A1-201ENST00000328333 C1orf216Q8TAB5 229 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 STYXQ8WUJ0 223 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 ZNF700Q9H0M5 742 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 MED31Q9Y3C7 131 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 A8MUI8 341 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 SLITRK3O94933 977 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 COL6A1P12109 1028 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 ZNF81P51508 661 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 STXBP1P61764 594 aaKnown RBP14.04□□□□□ -0.16
COL7A1-201ENST00000328333 QPCTQ16769 361 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 ARL13AQ5H913 290 aaPredicted RBP14.04□□□□□ -0.16
COL7A1-201ENST00000328333 CYP4V2Q6ZWL3 525 aaPredicted RBP14.04□□□□□ -0.16
COL7A1-201ENST00000328333 ING5Q8WYH8 240 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 COL21A1Q96P44 957 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 HIST1H2AAQ96QV6 131 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 NPEPPSL1A6NEC2 478 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 LACTBL1A8MY62 500 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 IFNA4P05014 189 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 CRADDP78560 199 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 SLC22A16Q86VW1 577 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 UBQLNLQ8IYU4 475 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 ZBTB2Q8N680 514 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 PHOX2BQ99453 314 aa14.04□□□□□ -0.16
COL7A1-201ENST00000328333 KCNS3Q9BQ31 491 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms