RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 EIF4G3O43432 1585 aaKnown RBP3.15□□□□□ -1.91
HMGB1-201ENST00000326004 FANCD2Q9BXW9 1451 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 SMARCA4P51532 1647 aa3.15□□□□□ -1.91
HMGB1-201ENST00000326004 CLASP1Q7Z460 1538 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 A0A1W2PRB8 838 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 TMEM221A6NGB7 291 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 P2RY10O00398 339 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 XPNPEP2O43895 674 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 OR10H2O60403 315 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 TBX10O75333 385 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 TOMM70O94826 608 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 GGPS1O95749 300 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 CPT2P23786 658 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 THOP1P52888 689 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 PPP5CP53041 499 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 RAD23AP54725 363 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 KRTAP1-1Q07627 177 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 PRKAA1Q13131 559 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 ZNF628Q5EBL2 1059 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 C6orf163Q5TEZ5 329 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 CHST3Q7LGC8 479 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 CCDC186Q7Z3E2 898 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 SMIM29Q86T20 159 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 CRYBG2Q8N1P7 616 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 OR2T12Q8NG77 320 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 NXNL1Q96CM4 212 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 HDAC11Q96DB2 347 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 RMDN1Q96DB5 314 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 RADILQ96JH8 1075 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 UHRF2Q96PU4 802 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 EPYCQ99645 322 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 TFB2MQ9H5Q4 396 aaKnown RBP3.14□□□□□ -1.91
HMGB1-201ENST00000326004 ZNF334Q9HCZ1 680 aaPredicted RBP3.14□□□□□ -1.91
HMGB1-201ENST00000326004 ACKR4Q9NPB9 350 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 ZFP57Q9NU63 452 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 PRMT7Q9NVM4 692 aaPredicted RBP3.14□□□□□ -1.91
HMGB1-201ENST00000326004 JRKLQ9Y4A0 524 aa3.14□□□□□ -1.91
HMGB1-201ENST00000326004 URB2Q14146 1524 aaKnown RBP3.14□□□□□ -1.91
HMGB1-201ENST00000326004 A0A0B4J293 547 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 HYKKA2RU49 373 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 RNASEH1O60930 286 aaKnown RBP3.13□□□□□ -1.91
HMGB1-201ENST00000326004 C22orf31O95567 290 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 FYNP06241 537 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 APOA4P06727 396 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 RAB40ALP0C0E4 278 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 CCDC175P0C221 793 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 ACP2P11117 423 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 NR1D1P20393 614 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 MSH3P20585 1137 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 ANOS1P23352 680 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 PHEXP78562 749 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 PRKCZQ05513 592 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 RALGDSQ12967 914 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 KLHL22Q53GT1 634 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 SLC27A1Q6PCB7 646 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 C19orf48Q6RUI8 117 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 DGLUCYQ7Z3D6 616 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 CENPVQ7Z7K6 275 aaPredicted RBP3.13□□□□□ -1.91
HMGB1-201ENST00000326004 COMMD2Q86X83 199 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 PLD3Q8IV08 490 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 FAM114A1Q8IWE2 563 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 CEP57L1Q8IYX8 460 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 RNF128Q8TEB7 428 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 CCDC107Q8WV48 283 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 ZFAND2BQ8WV99 257 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 STAMBPL1Q96FJ0 436 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 HES6Q96HZ4 224 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 LMLNQ96KR4 655 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 SFXN2Q96NB2 322 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 INPP4AQ96PE3 977 aaPredicted RBP3.13□□□□□ -1.91
HMGB1-201ENST00000326004 AP1M1Q9BXS5 423 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 VN1R1Q9GZP7 353 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 ARRDC1-AS1Q9H2J1 176 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 CNOT10Q9H9A5 744 aaKnown RBP3.13□□□□□ -1.91
HMGB1-201ENST00000326004 TBC1D17Q9HA65 648 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 OSER1Q9NX31 292 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 WDR35Q9P2L0 1181 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 ACAD8Q9UKU7 415 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 ZHX1Q9UKY1 873 aaPredicted RBP3.13□□□□□ -1.91
HMGB1-201ENST00000326004 SLC7A7Q9UM01 511 aa3.13□□□□□ -1.91
HMGB1-201ENST00000326004 AQRO60306 1485 aaKnown RBP eCLIP3.13□□□□□ -1.912e-9■■■■□ 19.7
HMGB1-201ENST00000326004 SOS1Q07889 1333 aaPredicted RBP3.13□□□□□ -1.91
HMGB1-201ENST00000326004 DIP2BQ9P265 1576 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 PTPRMP28827 1452 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 SNAPC4Q5SXM2 1469 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 A0A1W2PN81 502 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 A0A1W2PPQ1 181 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 FEZF1A0PJY2 475 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 E9PI62 339 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 H7C0S8 307 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 CCER2I3L3R5 266 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 MEIS2O14770 477 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 SYNCRIPO60506 623 aaKnown RBP3.12□□□□□ -1.91
HMGB1-201ENST00000326004 LMX1BO60663 402 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 TADA2AO75478 443 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 ZNF432O94892 652 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 WDPCPO95876 746 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 IGLV2-11P01706 119 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 NR3C1P04150 777 aa3.12□□□□□ -1.91
HMGB1-201ENST00000326004 GNAZP19086 355 aa3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms