RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 CST9LP1Q5W188 147 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 LPCAT3Q6P1A2 487 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 ASCL4Q6XD76 172 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 VRK2Q86Y07 508 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 DCUN1D3Q8IWE4 304 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 SVBPQ8N300 66 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 KDM8Q8N371 416 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 OR8D1Q8WZ84 308 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 SLAMF9Q96A28 289 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 AP5M1Q9H0R1 490 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 KIAA1522Q9P206 1035 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 KLQ9UEF7 1012 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 STAP1Q9ULZ2 295 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 ENTPD4Q9Y227 616 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 OSGIN2Q9Y236 505 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 CUL7Q14999 1698 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 A0A0B4J2A0 478 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 SULT1C2O00338 296 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 OGTO15294 1046 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 FKTNO75072 461 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 SERPINE1P05121 402 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 POLBP06746 335 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 TPH1P17752 444 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 CDC25BP30305 580 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 HSD17B4P51659 736 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 MTMR2Q13614 643 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 ZNHIT3Q15649 155 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 NPTX1Q15818 432 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 CRY1Q16526 586 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 MAJINQ3KP22 176 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 LRRC66Q68CR7 880 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 DBX2Q6ZNG2 339 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 ENOSF1Q7L5Y1 443 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 TREML1Q86YW5 311 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 FBXW8Q8N3Y1 598 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 CDYL2Q8N8U2 506 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 PNLDC1Q8NA58 520 aaKnown RBP7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 THAP3Q8WTV1 239 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 ACOT11Q8WXI4 607 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 JSRP1Q96MG2 331 aaPredicted RBP7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 SCGB3A2Q96PL1 93 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 PKP4Q99569 1192 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 ATF6BQ99941 703 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 TMBIM4Q9HC24 238 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 MCCC2Q9HCC0 563 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 ACKR4Q9NPB9 350 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 SHPKQ9UHJ6 478 aa7.53□□□□□ -1.2
LIMCH1-201ENST00000313860 NPC1L1Q9UHC9 1359 aa7.52□□□□□ -1.2
LIMCH1-201ENST00000313860 LRIT2A6NDA9 550 aa7.52□□□□□ -1.2
LIMCH1-201ENST00000313860 H7C417 338 aa7.52□□□□□ -1.2
LIMCH1-201ENST00000313860 ZNF185O15231 689 aa7.52□□□□□ -1.2
LIMCH1-201ENST00000313860 UBOX5O94941 541 aa7.52□□□□□ -1.2
LIMCH1-201ENST00000313860 LYPLA2O95372 231 aa7.52□□□□□ -1.2
LIMCH1-201ENST00000313860 CST1P01037 141 aa7.52□□□□□ -1.2
LIMCH1-201ENST00000313860 PROS1P07225 676 aa7.52□□□□□ -1.2
LIMCH1-201ENST00000313860 PRPS2P11908 318 aa7.52□□□□□ -1.2
LIMCH1-201ENST00000313860 TKTL1P51854 596 aa7.52□□□□□ -1.2
LIMCH1-201ENST00000313860 E2F1Q01094 437 aa7.52□□□□□ -1.2
LIMCH1-201ENST00000313860 KCNMA1Q12791 1236 aa7.52□□□□□ -1.2
LIMCH1-201ENST00000313860 NFX1Q12986 1120 aaKnown RBP7.52□□□□□ -1.2
LIMCH1-201ENST00000313860 MEP1AQ16819 746 aa7.52□□□□□ -1.2
LIMCH1-201ENST00000313860 C1orf87Q8N0U7 546 aa7.52□□□□□ -1.2
LIMCH1-201ENST00000313860 GATSQ8NAP1 163 aa7.52□□□□□ -1.2
LIMCH1-201ENST00000313860 OR2M3Q8NG83 312 aa7.52□□□□□ -1.2
LIMCH1-201ENST00000313860 SLC5A11Q8WWX8 675 aa7.52□□□□□ -1.2
LIMCH1-201ENST00000313860 MYLIPQ8WY64 445 aa7.52□□□□□ -1.2
LIMCH1-201ENST00000313860 KCNN1Q92952 543 aa7.52□□□□□ -1.2
LIMCH1-201ENST00000313860 CAMK1GQ96NX5 476 aa7.52□□□□□ -1.2
LIMCH1-201ENST00000313860 PSMG3Q9BT73 122 aaPredicted RBP7.52□□□□□ -1.2
LIMCH1-201ENST00000313860 P4HTMQ9NXG6 502 aa7.52□□□□□ -1.2
LIMCH1-201ENST00000313860 ZMYM2Q9UBW7 1377 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 ZNF320A2RRD8 509 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 SGK494L7N484 410 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 PDLIM1O00151 329 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 EI24O14681 340 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 SUSD5O60279 629 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 PSEN2P49810 448 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 EMP2P54851 167 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 LIPEQ05469 1076 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 PLGLAQ15195 96 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 ZNF667Q5HYK9 610 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 PPP1R15BQ5SWA1 713 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 SLX4IPQ5VYV7 408 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 ZNF549Q6P9A3 640 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 TMUB2Q71RG4 321 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 DPP9Q86TI2 863 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 SYVN1Q86TM6 617 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 ADIPOR2Q86V24 386 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 DNAAF5Q86Y56 855 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 ERO1BQ86YB8 467 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 AADATQ8N5Z0 425 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 PCDH20Q8N6Y1 951 aaKnown RBP7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 SH3RF3Q8TEJ3 882 aaPredicted RBP7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 FBXL8Q96CD0 374 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 SGK494Q96LW2 274 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 LMAN2LQ9H0V9 348 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 DPAGT1Q9H3H5 408 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 ASB8Q9H765 288 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 ACTR8Q9H981 624 aa7.52□□□□□ -1.21
LIMCH1-201ENST00000313860 CRLF2Q9HC73 371 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 66.5 ms