RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 PHC3Q8NDX5 983 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 MED8Q96G25 268 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 HIC2Q96JB3 615 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 TRIM39Q9HCM9 518 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 NUP214P35658 2090 aaPredicted RBP16.12■□□□□ 0.17
USP4-201ENST00000265560 STK16O75716 305 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 WDR47O94967 919 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 FGF4P08620 206 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 PPP2CBP62714 309 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 PPP2CAP67775 309 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 KIF19Q2TAC6 998 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 AGKQ53H12 422 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 FRMD1Q8N878 549 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 RCN3Q96D15 328 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 SIPA1Q96FS4 1042 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 NPAS2Q99743 824 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 SLC12A9Q9BXP2 914 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 RASSF4Q9H2L5 321 aa16.12■□□□□ 0.17
USP4-201ENST00000265560 SHISA7A6NL88 538 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 SH3BGRLO75368 114 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 PDE5AO76074 875 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 SLCO2B1O94956 709 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 MLYCDO95822 493 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 ADH1BP00325 375 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 FUCA1P04066 466 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 ENO3P13929 434 aaPredicted RBP16.11■□□□□ 0.17
USP4-201ENST00000265560 ACSL1P33121 698 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 NUDT2P50583 147 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 NEK2P51955 445 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 COL19A1Q14993 1142 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 ABRAXAS2Q15018 415 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 IRF4Q15306 451 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 PCBP2Q15366 365 aaKnown RBP eCLIP16.11■□□□□ 0.17
USP4-201ENST00000265560 PLEKHS1Q5SXH7 462 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 METTL21CQ5VZV1 264 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 LAYNQ6UX15 382 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 RNF148Q8N7C7 305 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 CCDC124Q96CT7 223 aaKnown RBP16.11■□□□□ 0.17
USP4-201ENST00000265560 NFKBIL1Q9UBC1 381 aaPredicted RBP16.11■□□□□ 0.17
USP4-201ENST00000265560 PLAGL1Q9UM63 463 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 H0Y8X5 98 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 H3BM21 787 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 CLGNO14967 610 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 CFLARO15519 480 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 LILRB5O75023 590 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 CPOXP36551 454 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 CLDN2P57739 230 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 CDK3Q00526 305 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 TRAF3Q13114 568 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 PRKG2Q13237 762 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 GBX1Q14549 363 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 SULT1C3Q6IMI6 304 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 NEK5Q6P3R8 708 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 HMGB4Q8WW32 186 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 RAB7BQ96AH8 199 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 FAR2Q96K12 515 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 CCDC28BQ9BUN5 200 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 C1QTNF3Q9BXJ4 246 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 KLQ9UEF7 1012 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 PLEKHM1Q9Y4G2 1056 aa16.11■□□□□ 0.17
USP4-201ENST00000265560 CBSLP0DN79 551 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 EPORP19235 508 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 CBSP35520 551 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 HK2P52789 917 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 HMGCS1Q01581 520 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 DPTQ07507 201 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 SGCGQ13326 291 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 CHST15Q7LFX5 561 aaPredicted RBP16.1■□□□□ 0.17
USP4-201ENST00000265560 NLRP8Q86W28 1048 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 RALGPS2Q86X27 583 aaPredicted RBP16.1■□□□□ 0.17
USP4-201ENST00000265560 MCOLN3Q8TDD5 553 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 WDR60Q8WVS4 1066 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 MRGPRX1Q96LB2 322 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 PRM3Q9NNZ6 103 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 INTS7Q9NVH2 962 aaKnown RBP16.1■□□□□ 0.17
USP4-201ENST00000265560 TNPO3Q9Y5L0 923 aaKnown RBP16.1■□□□□ 0.17
USP4-201ENST00000265560 PABPN1LA6NDY0 278 aaKnown RBP16.1■□□□□ 0.17
USP4-201ENST00000265560 GFYI3L273 518 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 K7EPI3 171 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 AP2A2O94973 939 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 SLC16A8O95907 504 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 FAM91A1Q658Y4 838 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 DEFB107AQ8IZN7 70 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 PGBD3Q8N328 593 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 CMTM5Q96DZ9 223 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 GABRG3Q99928 467 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 TRIM54Q9BYV2 358 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 DENND2DQ9H6A0 471 aaPredicted RBP16.1■□□□□ 0.17
USP4-201ENST00000265560 CA14Q9ULX7 337 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 SLC5A10A0PJK1 596 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 UROSP10746 265 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 EPB42P16452 691 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 MAP4P27816 1152 aaKnown RBP16.1■□□□□ 0.17
USP4-201ENST00000265560 ADPRHP54922 357 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 NAE1Q13564 534 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 ASB2Q96Q27 587 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 ZNF382Q96SR6 550 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 TUBB6Q9BUF5 446 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 ZNF385DQ9H6B1 395 aa16.1■□□□□ 0.17
USP4-201ENST00000265560 ACTR8Q9H981 624 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms