RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 SNX19Q92543 992 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 ULK4Q96C45 1275 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 IKZF5Q9H5V7 419 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 LRTM1Q9HBL6 345 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 BLOC1S6Q9UL45 172 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 AP3M1Q9Y2T2 418 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 ITGALP20701 1170 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 GSTM2P28161 218 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 SREBF2Q12772 1141 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 LAPTM5Q13571 262 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 MOGQ16653 247 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 PHKG1Q16816 387 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 SPESP1Q6UW49 350 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 SNX20Q7Z614 316 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 UPF1Q92900 1129 aaKnown RBP eCLIP18.35■□□□□ 0.53
CPSF3-201ENST00000238112 CEP295NLQ96MC4 621 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 OR52E6Q96RD3 313 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 FEM1AQ9BSK4 669 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 LHPPQ9H008 270 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 SLC25A37Q9NYZ2 338 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 PCDHGA8Q9Y5G5 932 aa18.35■□□□□ 0.53
CPSF3-201ENST00000238112 K7EPI3 171 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 TBL1XO60907 577 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 PRKD3O94806 890 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 WDR47O94967 919 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 PGLSO95336 258 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 BCL10O95999 233 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 PPP2R2BQ00005 443 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 NFATC2Q13469 925 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 ADHFE1Q8IWW8 467 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 HS3ST5Q8IZT8 346 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 EID3Q8N140 333 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 ZBTB2Q8N680 514 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 KRTCAP2Q8N6L1 136 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 DDHD1Q8NEL9 900 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 MBOAT4Q96T53 435 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 BEGAINQ9BUH8 593 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 CLMPQ9H6B4 373 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 ZFYVE1Q9HBF4 777 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 USE1Q9NZ43 259 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 PDE10AQ9Y233 779 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 PRSS21Q9Y6M0 314 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 C1orf232A0A0U1RR37 186 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 CA12O43570 354 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 GALTP07902 379 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 SLC10A3P09131 477 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 EBLN1P0CF75 366 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 RPL17P18621 184 aaKnown RBP18.34■□□□□ 0.53
CPSF3-201ENST00000238112 RUNDC3AQ59EK9 446 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 C6orf141Q5SZD1 244 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 C16orf87Q6PH81 154 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 GCNT7Q6ZNI0 430 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 RNF165Q6ZSG1 346 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 TRIM46Q7Z4K8 759 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 MSRB3Q8IXL7 192 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 MICU2Q8IYU8 434 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 RGL4Q8IZJ4 473 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 SPARTQ8N0X7 666 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 PJA1Q8NG27 643 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 WBP2Q969T9 261 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 RHBDF1Q96CC6 855 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 CCDC138Q96M89 665 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 TM6SF2Q9BZW4 377 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 RNF38Q9H0F5 515 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 TRPS1Q9UHF7 1281 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 UTS2RQ9UKP6 389 aa18.34■□□□□ 0.53
CPSF3-201ENST00000238112 TDRKHQ9Y2W6 561 aaKnown RBP18.34■□□□□ 0.53
CPSF3-201ENST00000238112 E2F6O75461 281 aa18.33■□□□□ 0.53
CPSF3-201ENST00000238112 EPB42P16452 691 aa18.33■□□□□ 0.53
CPSF3-201ENST00000238112 OR1D2P34982 312 aa18.33■□□□□ 0.53
CPSF3-201ENST00000238112 AP1S1P61966 158 aa18.33■□□□□ 0.53
CPSF3-201ENST00000238112 TAF12Q16514 161 aa18.33■□□□□ 0.53
CPSF3-201ENST00000238112 MEP1AQ16819 746 aa18.33■□□□□ 0.53
CPSF3-201ENST00000238112 SAPCD2Q86UD0 394 aa18.33■□□□□ 0.53
CPSF3-201ENST00000238112 CHDHQ8NE62 594 aaPredicted RBP18.33■□□□□ 0.53
CPSF3-201ENST00000238112 OR52E4Q8NGH9 312 aa18.33■□□□□ 0.53
CPSF3-201ENST00000238112 OR6K2Q8NGY2 324 aa18.33■□□□□ 0.53
CPSF3-201ENST00000238112 PIH1D2Q8WWB5 315 aa18.33■□□□□ 0.53
CPSF3-201ENST00000238112 TANKQ92844 425 aa18.33■□□□□ 0.53
CPSF3-201ENST00000238112 PLEKHA8Q96JA3 519 aa18.33■□□□□ 0.53
CPSF3-201ENST00000238112 AMBRA1Q9C0C7 1298 aa18.33■□□□□ 0.53
CPSF3-201ENST00000238112 LATS2Q9NRM7 1088 aa18.33■□□□□ 0.53
CPSF3-201ENST00000238112 CRLS1Q9UJA2 301 aa18.33■□□□□ 0.53
CPSF3-201ENST00000238112 C3orf18Q9UK00 162 aa18.33■□□□□ 0.53
CPSF3-201ENST00000238112 LOC730098B7Z3J9 87 aa18.33■□□□□ 0.52
CPSF3-201ENST00000238112 MANBAO00462 879 aa18.33■□□□□ 0.52
CPSF3-201ENST00000238112 GAPDHSO14556 408 aaPredicted RBP18.33■□□□□ 0.52
CPSF3-201ENST00000238112 HS6ST1O60243 411 aa18.33■□□□□ 0.52
CPSF3-201ENST00000238112 INHBBP09529 407 aa18.33■□□□□ 0.52
CPSF3-201ENST00000238112 TFPTP0C1Z6 253 aa18.33■□□□□ 0.52
CPSF3-201ENST00000238112 ACRV1P26436 265 aa18.33■□□□□ 0.52
CPSF3-201ENST00000238112 CA5AP35218 305 aa18.33■□□□□ 0.52
CPSF3-201ENST00000238112 PIGAP37287 484 aa18.33■□□□□ 0.52
CPSF3-201ENST00000238112 GABARAPL2P60520 117 aa18.33■□□□□ 0.52
CPSF3-201ENST00000238112 KCNAB2Q13303 367 aa18.33■□□□□ 0.52
CPSF3-201ENST00000238112 BFSP2Q13515 415 aa18.33■□□□□ 0.52
CPSF3-201ENST00000238112 SUSD1Q6UWL2 747 aa18.33■□□□□ 0.52
CPSF3-201ENST00000238112 LRRC8DQ7L1W4 858 aa18.33■□□□□ 0.52
CPSF3-201ENST00000238112 PHACTR4Q8IZ21 702 aa18.33■□□□□ 0.52
CPSF3-201ENST00000238112 CLHC1Q8NHS4 586 aa18.33■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms