RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 CST11Q9H112 138 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 WDCPQ9H6R7 721 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 EXO5Q9H790 373 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 DDIT4Q9NX09 232 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 GLTPQ9NZD2 209 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 CNTN3Q9P232 1028 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 TMEM181Q9P2C4 612 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 VWA7Q9Y334 891 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 CNTNAP1P78357 1384 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 MROH1Q8NDA8 1641 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 BORCS7-ASMTA0A0B4J1R7 106 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 PRAMEF2O60811 474 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 RNASEH2AO75792 299 aaKnown RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 MATN4O95460 622 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 CPSF4O95639 269 aaKnown RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 TCEA1P23193 301 aaKnown RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 CCR1P32246 355 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 MAGEA12P43365 314 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 RAP2BP61225 183 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 BTG1P62324 171 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 DSG2Q14126 1118 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 PON2Q15165 354 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 CHRNA2Q15822 529 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 SWSAP1Q6NVH7 229 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 RNF130Q86XS8 419 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 RNF149Q8NC42 400 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 TMEM161BQ8NDZ6 487 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 TWIST2Q8WVJ9 160 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 GEMIN6Q8WXD5 167 aaKnown RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 TMEM209Q96SK2 561 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 TFB2MQ9H5Q4 396 aaKnown RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 CDC7O00311 574 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 CATP04040 527 aaKnown RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 GNAO1P09471 354 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 CASP3P42574 277 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 SLC16A1P53985 500 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 HERVK_113P63132 956 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 ACTC1P68032 377 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 ACTA1P68133 377 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 SIM2Q14190 667 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 TBCEQ15813 527 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 ATG9BQ674R7 924 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 CERS6Q6ZMG9 384 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 AKT1S1Q96B36 256 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 PANX1Q96RD7 426 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 ERVK-6Q9BXR3 956 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF639Q9UID6 485 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 A0A075B6Q4 140 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 SGCEO43556 437 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 TMEM127O75204 238 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 SNNO75324 88 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 PAPSS2O95340 614 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 RETP07949 1114 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 PTPN3P26045 913 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 MAOBP27338 520 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 HTR1EP28566 365 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 HCAR3P49019 387 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 ADAM8P78325 824 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 ABHD18Q0P651 414 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 ZNF425Q6IV72 752 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 RHBDF2Q6PJF5 856 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 SAMD14Q8IZD0 417 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 C4orf32Q8N8J7 132 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 WNT8BQ93098 351 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 VRK1Q99986 396 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 SPON1Q9HCB6 807 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 ADAMTS6Q9UKP5 1117 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 DIP2AQ14689 1571 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 DPYSL4O14531 572 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 MSI1O43347 362 aaKnown RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 SCGNO76038 276 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 ATE1O95260 518 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 TFAP2AP05549 437 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 UBBP0CG47 229 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 UBCP0CG48 685 aaKnown RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 HOXD8P13378 290 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 LCP1P13796 627 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 CSTF2P33240 577 aaKnown RBP eCLIP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 RPS27AP62979 156 aaKnown RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 UBA52P62987 128 aaKnown RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 RPP38P78345 283 aaKnown RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 TEKQ02763 1124 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 GCNT6Q5T4J0 391 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 SIGIRRQ6IA17 410 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 METTL2BQ6P1Q9 378 aaKnown RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 KLHL24Q6TFL4 600 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 LRRC69Q6ZNQ3 347 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 CHST13Q8NET6 341 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 ELMO3Q96BJ8 720 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 OR52B2Q96RD2 323 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 TBCDQ9BTW9 1192 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 POLR2J2Q9GZM3 115 aaKnown RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 BTRCQ9Y297 605 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 SLC7A4O43246 635 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 ATP6AP2O75787 350 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 CDKL1Q00532 357 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 CAMK2GQ13555 558 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-220ENST00000641603 ARHGEF7Q14155 803 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 TOR1AIP1Q5JTV8 583 aa4.6□□□□□ -1.67
SCN1A-220ENST00000641603 TMEM86AQ8N2M4 240 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms