RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 PEX16Q9Y5Y5 336 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 A6NHS1 94 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 EML1O00423 815 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CAPN5O15484 640 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 PRAMEF1O95521 474 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 COX4I1P13073 169 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ORM2P19652 201 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 TUBG1P23258 451 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 PRPH2P23942 346 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 PTPN4P29074 926 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ERP29P30040 261 aaKnown RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 SERPINF1P36955 418 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 OSTNP61366 133 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 FUT11Q495W5 492 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 MANEAQ5SRI9 462 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 PRAMEF14Q5SWL7 426 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ABHD17BQ5VST6 288 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF425Q6IV72 752 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 SCARA5Q6ZMJ2 495 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 QSOX2Q6ZRP7 698 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CREB3L2Q70SY1 520 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 MAMDC2Q7Z304 686 aaPredicted RBP2.75□□□□□ -1.97
SCN1A-219ENST00000641575 TMEM40Q8WWA1 233 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 TPD52L3Q96J77 140 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 PDCD2LQ9BRP1 358 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CYP3A43Q9HB55 503 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 CCNB1IP1Q9NPC3 277 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 HEBP1Q9NRV9 189 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 UBQLN2Q9UHD9 624 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 NFS1Q9Y697 457 aa2.75□□□□□ -1.97
SCN1A-219ENST00000641575 NOTCH2Q04721 2471 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 B8ZZF3 427 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 TMEM150CB9EJG8 249 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 SLCO1B7G3V0H7 640 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 KCNK5O95279 499 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 SLC34A2O95436 690 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 FASP25445 335 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 RPL5P46777 297 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 MANFP55145 182 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PEX3P56589 373 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 C2orf80Q0P641 193 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 SQLEQ14534 574 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF234Q14588 700 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 FAM74A1Q5RGS3 127 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 RAB12Q6IQ22 244 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ADNP2Q6IQ32 1131 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 RAD9BQ6WBX8 426 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 C12orf56Q8IXR9 622 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ZZZ3Q8IYH5 903 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 SMYD4Q8IYR2 804 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 LRRC34Q8IZ02 419 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 TMEM86AQ8N2M4 240 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 SFRP1Q8N474 314 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ANKLE1Q8NAG6 615 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ZNF540Q8NDQ6 660 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 OR5D16Q8NGK9 328 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 TNFAIP8L1Q8WVP5 186 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 FIG4Q92562 907 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 MFSD3Q96ES6 412 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 RBM15Q96T37 977 aaKnown RBP eCLIP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 NAA11Q9BSU3 229 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 GBA3Q9H227 469 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CAPN10Q9HC96 672 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 NKX1-2Q9UD57 310 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ZNHIT2Q9UHR6 403 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 KIAA1024Q9UPX6 916 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 STAB2Q8WWQ8 2551 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 TTC37Q6PGP7 1564 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 HMX3A6NHT5 357 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 AGRPO00253 132 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 EEF2KO00418 725 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 SCDO00767 359 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CREBL2O60519 120 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 SLC22A3O75751 556 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 LGI1O95970 557 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 SNRPAP09012 282 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 HPCAL1P37235 193 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ACTR1BP42025 376 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 RPS9P46781 194 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 UBE2NP61088 152 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 SYT6Q5T7P8 510 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 TIGD3Q6B0B8 471 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 UNQ9370/PRO34162Q6UXP9 181 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 DEFB128Q7Z7B8 93 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 DEFB107AQ8IZN7 70 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 TBC1D15Q8TC07 691 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 GGHQ92820 318 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 C12orf43Q96C57 262 aaKnown RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ATG4CQ96DT6 458 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 CSPG4P5Q96PW8 444 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PBX4Q9BYU1 374 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 PAK6Q9NQU5 681 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 TBC1D13Q9NVG8 400 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 TAS2R13Q9NYV9 303 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 ADAM22Q9P0K1 906 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 IFT80Q9P2H3 777 aaPredicted RBP2.74□□□□□ -1.97
SCN1A-219ENST00000641575 MORF4L1Q9UBU8 362 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 RNF112Q9ULX5 631 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 HIF3AQ9Y2N7 669 aa2.74□□□□□ -1.97
SCN1A-219ENST00000641575 MMACHCQ9Y4U1 282 aa2.74□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms