RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 RECQLP46063 649 aaPredicted RBP11.32□□□□□ -0.6
CLN6-217ENST00000636964 ARSIQ5FYB1 569 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 RTL10Q7L3V2 364 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 GALNT4Q8N4A0 578 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 CELF5Q8N6W0 485 aaKnown RBP11.32□□□□□ -0.6
CLN6-217ENST00000636964 PCDH20Q8N6Y1 951 aaKnown RBP11.32□□□□□ -0.6
CLN6-217ENST00000636964 STAG3L4Q8TBR4 150 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 LKAAEAR1Q8TD35 194 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.32□□□□□ -0.6
CLN6-217ENST00000636964 KIAA1191Q96A73 305 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 ISG20Q96AZ6 181 aaKnown RBP11.32□□□□□ -0.6
CLN6-217ENST00000636964 PKP2Q99959 881 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 CLPBQ9H078 707 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 TFB2MQ9H5Q4 396 aaKnown RBP11.32□□□□□ -0.6
CLN6-217ENST00000636964 FANCFQ9NPI8 374 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 ACAD8Q9UKU7 415 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 CDYLQ9Y232 598 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 GBF1Q92538 1859 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 DNAH14Q0VDD8 3507 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 ATP6AP2A0A1C7CYW4 349 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 ATP6AP2O75787 350 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 TSPAN12O95859 305 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 ITGALP20701 1170 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 AGTR2P50052 363 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 IL2P60568 153 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 ERVK-21P61565 698 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 MRPS22P82650 360 aaKnown RBP11.32□□□□□ -0.6
CLN6-217ENST00000636964 ADGRE1Q14246 886 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 FAM78AQ5JUQ0 283 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 RARS2Q5T160 578 aaKnown RBP11.32□□□□□ -0.6
CLN6-217ENST00000636964 TPRG1Q6ZUI0 275 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 OSBPL6Q9BZF3 934 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 B3GNT4Q9C0J1 378 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 DERL2Q9GZP9 239 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 P2RY12Q9H244 342 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 COPS7BQ9H9Q2 264 aaPredicted RBP11.32□□□□□ -0.6
CLN6-217ENST00000636964 POLMQ9NP87 494 aaPredicted RBP11.32□□□□□ -0.6
CLN6-217ENST00000636964 B4GALT6Q9UBX8 382 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 MKL2Q9ULH7 1088 aa11.32□□□□□ -0.6
CLN6-217ENST00000636964 FAF1Q9UNN5 650 aaPredicted RBP11.32□□□□□ -0.6
CLN6-217ENST00000636964 A0A1B0GTL3 188 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 LEFTY1O75610 366 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 ESR1P03372 595 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 CAPNS1P04632 268 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 ZNF23P17027 643 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 EEF1DP29692 281 aaKnown RBP11.31□□□□□ -0.6
CLN6-217ENST00000636964 SLC6A11P48066 632 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 DGKGP49619 791 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 HSD17B7P56937 341 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 HERVK_113P63132 956 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 SH3BP2P78314 561 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 GDPD4Q6W3E5 623 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 USP45Q70EL2 814 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 SNX20Q7Z614 316 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 KRT77Q7Z794 578 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 CHERPQ8IWX8 916 aaKnown RBP11.31□□□□□ -0.6
CLN6-217ENST00000636964 TRPC4APQ8TEL6 797 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 FUBP1Q96AE4 644 aaKnown RBP11.31□□□□□ -0.6
CLN6-217ENST00000636964 PBXIP1Q96AQ6 731 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 ERVK-6Q9BXR3 956 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 PLGRKTQ9HBL7 147 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 ZDHHC4Q9NPG8 344 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 VCANP13611 3396 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 USP34Q70CQ2 3546 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 ANTXRLA6NF34 631 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 EPOPA6NHQ4 379 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 PLOD2O00469 737 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 ADH5P11766 374 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 SPAM1P38567 509 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 CLCN7P51798 805 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 KLF10Q13118 480 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 PDCD4Q53EL6 469 aaKnown RBP11.31□□□□□ -0.6
CLN6-217ENST00000636964 IGSF11Q5DX21 431 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 TJAP1Q5JTD0 557 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 NANOGP8Q6NSW7 305 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 SFTPA1Q8IWL2 248 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 FBXO39Q8N4B4 442 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 ARL6IP6Q8N6S5 226 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 KCNJ9Q92806 393 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 ECHDC3Q96DC8 303 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 MRGPRX3Q96LB0 322 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 LENG8Q96PV6 779 aaPredicted RBP11.31□□□□□ -0.6
CLN6-217ENST00000636964 HTATIP2Q9BUP3 242 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 NKX2-4Q9H2Z4 354 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 EML4Q9HC35 981 aaKnown RBP11.31□□□□□ -0.6
CLN6-217ENST00000636964 SEMA4BQ9NPR2 832 aaPredicted RBP11.31□□□□□ -0.6
CLN6-217ENST00000636964 VTI1BQ9UEU0 232 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 TRAF6Q9Y4K3 522 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 PTGDR2Q9Y5Y4 395 aa11.31□□□□□ -0.6
CLN6-217ENST00000636964 LRRC72A6NJI9 287 aa11.3□□□□□ -0.6
CLN6-217ENST00000636964 KERAO60938 352 aa11.3□□□□□ -0.6
CLN6-217ENST00000636964 SLC25A14O95258 325 aaPredicted RBP11.3□□□□□ -0.6
CLN6-217ENST00000636964 ZNF7P17097 686 aaPredicted RBP11.3□□□□□ -0.6
CLN6-217ENST00000636964 NNMTP40261 264 aa11.3□□□□□ -0.6
CLN6-217ENST00000636964 CDH15P55291 814 aa11.3□□□□□ -0.6
CLN6-217ENST00000636964 TUBA4AP68366 448 aa11.3□□□□□ -0.6
CLN6-217ENST00000636964 MS4A2Q01362 244 aa11.3□□□□□ -0.6
CLN6-217ENST00000636964 PPP1R3AQ16821 1122 aa11.3□□□□□ -0.6
CLN6-217ENST00000636964 ATP13A5Q4VNC0 1218 aa11.3□□□□□ -0.6
CLN6-217ENST00000636964 OGFOD2Q6N063 350 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms