RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 ACRV1P26436 265 aa17.9■□□□□ 0.46
CLN3-241ENST00000635861 MC4RP32245 332 aa17.9■□□□□ 0.46
CLN3-241ENST00000635861 NAP1L1P55209 391 aaKnown RBP17.9■□□□□ 0.46
CLN3-241ENST00000635861 SRSF1Q07955 248 aaKnown RBP eCLIP17.9■□□□□ 0.46
CLN3-241ENST00000635861 GPS2Q13227 327 aa17.9■□□□□ 0.46
CLN3-241ENST00000635861 IGFBP7Q16270 282 aa17.9■□□□□ 0.46
CLN3-241ENST00000635861 PARP6Q2NL67 630 aa17.9■□□□□ 0.46
CLN3-241ENST00000635861 FAM199XQ6PEV8 388 aaPredicted RBP17.9■□□□□ 0.46
CLN3-241ENST00000635861 TMEM135Q86UB9 458 aa17.9■□□□□ 0.46
CLN3-241ENST00000635861 DSELQ8IZU8 1212 aa17.9■□□□□ 0.46
CLN3-241ENST00000635861 OR4E2Q8NGC2 313 aa17.9■□□□□ 0.46
CLN3-241ENST00000635861 CCDC110Q8TBZ0 833 aa17.9■□□□□ 0.46
CLN3-241ENST00000635861 MR1Q95460 341 aa17.9■□□□□ 0.46
CLN3-241ENST00000635861 DPH2Q9BQC3 489 aaPredicted RBP17.9■□□□□ 0.46
CLN3-241ENST00000635861 PITPNM3Q9BZ71 974 aa17.9■□□□□ 0.46
CLN3-241ENST00000635861 OR52A5Q9H2C5 316 aa17.9■□□□□ 0.46
CLN3-241ENST00000635861 ANKMY1Q9P2S6 941 aa17.9■□□□□ 0.46
CLN3-241ENST00000635861 FAM8A1Q9UBU6 413 aa17.9■□□□□ 0.46
CLN3-241ENST00000635861 CCDC88CQ9P219 2028 aa17.9■□□□□ 0.46
CLN3-241ENST00000635861 SPTAN1Q13813 2472 aaKnown RBP17.9■□□□□ 0.46
CLN3-241ENST00000635861 SPTBN1Q01082 2364 aaKnown RBP17.9■□□□□ 0.46
CLN3-241ENST00000635861 AP2A2O94973 939 aa17.89■□□□□ 0.46
CLN3-241ENST00000635861 OLIG2Q13516 323 aa17.89■□□□□ 0.46
CLN3-241ENST00000635861 ZNF658BQ4V348 819 aaPredicted RBP17.89■□□□□ 0.46
CLN3-241ENST00000635861 KCTD11Q693B1 232 aa17.89■□□□□ 0.46
CLN3-241ENST00000635861 ARHGEF18Q6ZSZ5 1173 aa17.89■□□□□ 0.46
CLN3-241ENST00000635861 HPS6Q86YV9 775 aa17.89■□□□□ 0.46
CLN3-241ENST00000635861 FERD3LQ96RJ6 166 aa17.89■□□□□ 0.46
CLN3-241ENST00000635861 NLNQ9BYT8 704 aa17.89■□□□□ 0.46
CLN3-241ENST00000635861 LRRC40Q9H9A6 602 aa17.89■□□□□ 0.46
CLN3-241ENST00000635861 AKIRIN1Q9H9L7 192 aaPredicted RBP17.89■□□□□ 0.46
CLN3-241ENST00000635861 MLXIPLQ9NP71 852 aa17.89■□□□□ 0.46
CLN3-241ENST00000635861 NLE1Q9NVX2 485 aaPredicted RBP17.89■□□□□ 0.46
CLN3-241ENST00000635861 SLC9B1P1A6NJY1 282 aa17.89■□□□□ 0.45
CLN3-241ENST00000635861 MEN1O00255 615 aa17.89■□□□□ 0.45
CLN3-241ENST00000635861 PSMD3O43242 534 aa17.89■□□□□ 0.45
CLN3-241ENST00000635861 HBQ1P09105 142 aa17.89■□□□□ 0.45
CLN3-241ENST00000635861 NR1D1P20393 614 aa17.89■□□□□ 0.45
CLN3-241ENST00000635861 PRDX3P30048 256 aaKnown RBP17.89■□□□□ 0.45
CLN3-241ENST00000635861 TMPRSS15P98073 1019 aa17.89■□□□□ 0.45
CLN3-241ENST00000635861 P3H1Q32P28 736 aa17.89■□□□□ 0.45
CLN3-241ENST00000635861 PAPD7Q5XG87 772 aaKnown RBP17.89■□□□□ 0.45
CLN3-241ENST00000635861 SERPINA9Q86WD7 417 aa17.89■□□□□ 0.45
CLN3-241ENST00000635861 FAM26EQ8N5C1 309 aa17.89■□□□□ 0.45
CLN3-241ENST00000635861 LILRA3Q8N6C8 439 aaPredicted RBP17.89■□□□□ 0.45
CLN3-241ENST00000635861 STYXQ8WUJ0 223 aa17.89■□□□□ 0.45
CLN3-241ENST00000635861 ACSS2Q9NR19 701 aa17.89■□□□□ 0.45
CLN3-241ENST00000635861 SERTAD3Q9UJW9 196 aa17.89■□□□□ 0.45
CLN3-241ENST00000635861 GSAPA4D1B5 854 aa17.88■□□□□ 0.45
CLN3-241ENST00000635861 RCCD1A6NED2 376 aa17.88■□□□□ 0.45
CLN3-241ENST00000635861 C2orf74A8MZ97 194 aa17.88■□□□□ 0.45
CLN3-241ENST00000635861 MIF4GDA9UHW6 222 aaKnown RBP17.88■□□□□ 0.45
CLN3-241ENST00000635861 K7EM74 188 aa17.88■□□□□ 0.45
CLN3-241ENST00000635861 RRP9O43818 475 aaKnown RBP17.88■□□□□ 0.45
CLN3-241ENST00000635861 RORAP35398 523 aa17.88■□□□□ 0.45
CLN3-241ENST00000635861 PREPP48147 710 aa17.88■□□□□ 0.45
CLN3-241ENST00000635861 PGDP52209 483 aa17.88■□□□□ 0.45
CLN3-241ENST00000635861 RPS18P62269 152 aaKnown RBP17.88■□□□□ 0.45
CLN3-241ENST00000635861 CACNG1Q06432 222 aa17.88■□□□□ 0.45
CLN3-241ENST00000635861 IL10RAQ13651 578 aa17.88■□□□□ 0.45
CLN3-241ENST00000635861 BOP1Q14137 746 aaKnown RBP17.88■□□□□ 0.45
CLN3-241ENST00000635861 ZRANB3Q5FWF4 1079 aa17.88■□□□□ 0.45
CLN3-241ENST00000635861 PLEKHS1Q5SXH7 462 aa17.88■□□□□ 0.45
CLN3-241ENST00000635861 AMIGO1Q86WK6 493 aa17.88■□□□□ 0.45
CLN3-241ENST00000635861 SYCE1Q8N0S2 351 aa17.88■□□□□ 0.45
CLN3-241ENST00000635861 TXLNBQ8N3L3 684 aa17.88■□□□□ 0.45
CLN3-241ENST00000635861 UBL4BQ8N7F7 174 aa17.88■□□□□ 0.45
CLN3-241ENST00000635861 LRRC57Q8N9N7 239 aa17.88■□□□□ 0.45
CLN3-241ENST00000635861 OR52E1Q8NGJ3 308 aa17.88■□□□□ 0.45
CLN3-241ENST00000635861 ADAMTS17Q8TE56 1095 aa17.88■□□□□ 0.45
CLN3-241ENST00000635861 ALG3Q92685 438 aa17.88■□□□□ 0.45
CLN3-241ENST00000635861 CLIP3Q96DZ5 547 aa17.88■□□□□ 0.45
CLN3-241ENST00000635861 DNAJC1Q96KC8 554 aaKnown RBP17.88■□□□□ 0.45
CLN3-241ENST00000635861 RUFY1Q96T51 708 aa17.88■□□□□ 0.45
CLN3-241ENST00000635861 SLC25A23Q9BV35 468 aa17.88■□□□□ 0.45
CLN3-241ENST00000635861 TLR10Q9BXR5 811 aa17.88■□□□□ 0.45
CLN3-241ENST00000635861 TRIM55Q9BYV6 548 aa17.88■□□□□ 0.45
CLN3-241ENST00000635861 CHST8Q9H2A9 424 aa17.88■□□□□ 0.45
CLN3-241ENST00000635861 G3BP2Q9UN86 482 aaKnown RBP17.88■□□□□ 0.45
CLN3-241ENST00000635861 SNX7Q9UNH6 387 aa17.88■□□□□ 0.45
CLN3-241ENST00000635861 NUP210LQ5VU65 1888 aa17.88■□□□□ 0.45
CLN3-241ENST00000635861 SHANK1Q9Y566 2161 aa17.88■□□□□ 0.45
CLN3-241ENST00000635861 ESPL1Q14674 2120 aa17.87■□□□□ 0.45
CLN3-241ENST00000635861 SOWAHDA6NJG2 315 aa17.87■□□□□ 0.45
CLN3-241ENST00000635861 BTN3A1O00481 513 aa17.87■□□□□ 0.45
CLN3-241ENST00000635861 LIN7AO14910 233 aaPredicted RBP17.87■□□□□ 0.45
CLN3-241ENST00000635861 PTMAP06454 111 aaKnown RBP17.87■□□□□ 0.45
CLN3-241ENST00000635861 CYP2A7P20853 494 aa17.87■□□□□ 0.45
CLN3-241ENST00000635861 PSMA3P25788 255 aa17.87■□□□□ 0.45
CLN3-241ENST00000635861 CDC25BP30305 580 aa17.87■□□□□ 0.45
CLN3-241ENST00000635861 NSG1P42857 185 aa17.87■□□□□ 0.45
CLN3-241ENST00000635861 ARCN1P48444 511 aaKnown RBP17.87■□□□□ 0.45
CLN3-241ENST00000635861 VAV2P52735 878 aa17.87■□□□□ 0.45
CLN3-241ENST00000635861 PLOD1Q02809 727 aaPredicted RBP17.87■□□□□ 0.45
CLN3-241ENST00000635861 ITIH4Q14624 930 aa17.87■□□□□ 0.45
CLN3-241ENST00000635861 LINC00523Q86TU6 105 aa17.87■□□□□ 0.45
CLN3-241ENST00000635861 SLC38A9Q8NBW4 561 aa17.87■□□□□ 0.45
CLN3-241ENST00000635861 NAT14Q8WUY8 206 aa17.87■□□□□ 0.45
CLN3-241ENST00000635861 TFGQ92734 400 aaPredicted RBP17.87■□□□□ 0.45
CLN3-241ENST00000635861 TBRG4Q969Z0 631 aaKnown RBP eCLIP17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 70.4 ms