RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 ZNF385CQ66K41 422 aaPredicted RBP14.23□□□□□ -0.13
PNKP-218ENST00000625299 SP5Q6BEB4 398 aaPredicted RBP14.23□□□□□ -0.13
PNKP-218ENST00000625299 ALKBH5Q6P6C2 394 aaKnown RBP14.23□□□□□ -0.13
PNKP-218ENST00000625299 CDHR3Q6ZTQ4 885 aa14.23□□□□□ -0.13
PNKP-218ENST00000625299 RFX6Q8HWS3 928 aa14.23□□□□□ -0.13
PNKP-218ENST00000625299 MCEMP1Q8IX19 187 aa14.23□□□□□ -0.13
PNKP-218ENST00000625299 ACVR1CQ8NER5 493 aa14.23□□□□□ -0.13
PNKP-218ENST00000625299 FERD3LQ96RJ6 166 aa14.23□□□□□ -0.13
PNKP-218ENST00000625299 C17orf62Q9BQA9 187 aa14.23□□□□□ -0.13
PNKP-218ENST00000625299 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP14.23□□□□□ -0.13
PNKP-218ENST00000625299 IFT80Q9P2H3 777 aaPredicted RBP14.23□□□□□ -0.13
PNKP-218ENST00000625299 FAM153AQ9UHL3 310 aa14.23□□□□□ -0.13
PNKP-218ENST00000625299 BZW2Q9Y6E2 419 aaKnown RBP14.23□□□□□ -0.13
PNKP-218ENST00000625299 GAPDHSO14556 408 aaPredicted RBP14.22□□□□□ -0.13
PNKP-218ENST00000625299 PRAMEF1O95521 474 aa14.22□□□□□ -0.13
PNKP-218ENST00000625299 IGHEP01854 428 aa14.22□□□□□ -0.13
PNKP-218ENST00000625299 SERPING1P05155 500 aa14.22□□□□□ -0.13
PNKP-218ENST00000625299 PTPN3P26045 913 aa14.22□□□□□ -0.13
PNKP-218ENST00000625299 PTPRCAPQ14761 206 aa14.22□□□□□ -0.13
PNKP-218ENST00000625299 TEX44Q53QW1 395 aa14.22□□□□□ -0.13
PNKP-218ENST00000625299 SLC9A4Q6AI14 798 aa14.22□□□□□ -0.13
PNKP-218ENST00000625299 HOOK3Q86VS8 718 aa14.22□□□□□ -0.13
PNKP-218ENST00000625299 KCNMB4Q86W47 210 aa14.22□□□□□ -0.13
PNKP-218ENST00000625299 IPMKQ8NFU5 416 aa14.22□□□□□ -0.13
PNKP-218ENST00000625299 DTX3LQ8TDB6 740 aa14.22□□□□□ -0.13
PNKP-218ENST00000625299 RBM41Q96IZ5 413 aaKnown RBP14.22□□□□□ -0.13
PNKP-218ENST00000625299 CNDP1Q96KN2 507 aa14.22□□□□□ -0.13
PNKP-218ENST00000625299 NAP1L5Q96NT1 182 aaPredicted RBP14.22□□□□□ -0.13
PNKP-218ENST00000625299 OLFM3Q96PB7 478 aa14.22□□□□□ -0.13
PNKP-218ENST00000625299 GBP5Q96PP8 586 aa14.22□□□□□ -0.13
PNKP-218ENST00000625299 TRAPPC9Q96Q05 1148 aa14.22□□□□□ -0.13
PNKP-218ENST00000625299 BARD1Q99728 777 aaKnown RBP14.22□□□□□ -0.13
PNKP-218ENST00000625299 WDR77Q9BQA1 342 aaPredicted RBP14.22□□□□□ -0.13
PNKP-218ENST00000625299 SMOXQ9NWM0 555 aa14.22□□□□□ -0.13
PNKP-218ENST00000625299 IRAK4Q9NWZ3 460 aa14.22□□□□□ -0.13
PNKP-218ENST00000625299 HACD3Q9P035 362 aa14.22□□□□□ -0.13
PNKP-218ENST00000625299 NOVA2Q9UNW9 492 aaKnown RBP14.22□□□□□ -0.13
PNKP-218ENST00000625299 CDYLQ9Y232 598 aa14.22□□□□□ -0.13
PNKP-218ENST00000625299 HEBP2Q9Y5Z4 205 aa14.22□□□□□ -0.13
PNKP-218ENST00000625299 NUP210LQ5VU65 1888 aa14.21□□□□□ -0.13
PNKP-218ENST00000625299 F8P00451 2351 aa14.21□□□□□ -0.13
PNKP-218ENST00000625299 LOC285095A0A1B0GVY8 99 aa14.21□□□□□ -0.13
PNKP-218ENST00000625299 CCDC66A2RUB6 948 aa14.21□□□□□ -0.13
PNKP-218ENST00000625299 E2F3O00716 465 aa14.21□□□□□ -0.13
PNKP-218ENST00000625299 STX7O15400 261 aaKnown RBP14.21□□□□□ -0.13
PNKP-218ENST00000625299 ALOX12BO75342 701 aa14.21□□□□□ -0.13
PNKP-218ENST00000625299 OR2B3O76000 313 aa14.21□□□□□ -0.13
PNKP-218ENST00000625299 KRT38O76015 456 aa14.21□□□□□ -0.13
PNKP-218ENST00000625299 MSL3P1P0C860 447 aa14.21□□□□□ -0.13
PNKP-218ENST00000625299 NFKB1P19838 968 aa14.21□□□□□ -0.13
PNKP-218ENST00000625299 TYRO3Q06418 890 aa14.21□□□□□ -0.13
PNKP-218ENST00000625299 MESDQ14696 234 aa14.21□□□□□ -0.13
PNKP-218ENST00000625299 KDELC1Q6UW63 502 aa14.21□□□□□ -0.13
PNKP-218ENST00000625299 PPP1R32Q7Z5V6 425 aa14.21□□□□□ -0.13
PNKP-218ENST00000625299 TRIM73Q86UV7 250 aa14.21□□□□□ -0.13
PNKP-218ENST00000625299 FJX1Q86VR8 437 aa14.21□□□□□ -0.13
PNKP-218ENST00000625299 OR2Y1Q8NGV0 311 aa14.21□□□□□ -0.13
PNKP-218ENST00000625299 ZNF398Q8TD17 642 aa14.21□□□□□ -0.13
PNKP-218ENST00000625299 GRHL3Q8TE85 626 aa14.21□□□□□ -0.13
PNKP-218ENST00000625299 CPLX3Q8WVH0 158 aa14.21□□□□□ -0.13
PNKP-218ENST00000625299 DCUN1D1Q96GG9 259 aa14.21□□□□□ -0.13
PNKP-218ENST00000625299 TEKT5Q96M29 485 aa14.21□□□□□ -0.13
PNKP-218ENST00000625299 PITPNM3Q9BZ71 974 aa14.21□□□□□ -0.13
PNKP-218ENST00000625299 SPRTNQ9H040 489 aaPredicted RBP14.21□□□□□ -0.13
PNKP-218ENST00000625299 NAT10Q9H0A0 1025 aaKnown RBP14.21□□□□□ -0.13
PNKP-218ENST00000625299 XKR8Q9H6D3 395 aa14.21□□□□□ -0.13
PNKP-218ENST00000625299 ATP13A2Q9NQ11 1180 aa14.21□□□□□ -0.13
PNKP-218ENST00000625299 DHCR7Q9UBM7 475 aaKnown RBP14.21□□□□□ -0.13
PNKP-218ENST00000625299 CSMD2Q7Z408 3487 aa14.21□□□□□ -0.14
PNKP-218ENST00000625299 PCM1Q15154 2024 aa14.2□□□□□ -0.14
PNKP-218ENST00000625299 A0A1B0GTH6 734 aa14.2□□□□□ -0.14
PNKP-218ENST00000625299 C2orf74A8MZ97 194 aa14.2□□□□□ -0.14
PNKP-218ENST00000625299 SERPINC1P01008 464 aa14.2□□□□□ -0.14
PNKP-218ENST00000625299 KRT1P04264 644 aa14.2□□□□□ -0.14
PNKP-218ENST00000625299 ZFXP17010 805 aaPredicted RBP14.2□□□□□ -0.14
PNKP-218ENST00000625299 CD68P34810 354 aaPredicted RBP14.2□□□□□ -0.14
PNKP-218ENST00000625299 DCDP81605 110 aaKnown RBP14.2□□□□□ -0.14
PNKP-218ENST00000625299 CDC16Q13042 620 aa14.2□□□□□ -0.14
PNKP-218ENST00000625299 SLC1A5Q15758 541 aa14.2□□□□□ -0.14
PNKP-218ENST00000625299 BCL7AQ4VC05 210 aa14.2□□□□□ -0.14
PNKP-218ENST00000625299 ODF2Q5BJF6 829 aa14.2□□□□□ -0.14
PNKP-218ENST00000625299 TMEM151BQ8IW70 566 aa14.2□□□□□ -0.14
PNKP-218ENST00000625299 C19orf47Q8N9M1 422 aaKnown RBP14.2□□□□□ -0.14
PNKP-218ENST00000625299 PHC3Q8NDX5 983 aa14.2□□□□□ -0.14
PNKP-218ENST00000625299 OR52E1Q8NGJ3 308 aa14.2□□□□□ -0.14
PNKP-218ENST00000625299 CTNNBL1Q8WYA6 563 aaPredicted RBP14.2□□□□□ -0.14
PNKP-218ENST00000625299 RNF25Q96BH1 459 aaPredicted RBP14.2□□□□□ -0.14
PNKP-218ENST00000625299 MRGPRX2Q96LB1 330 aa14.2□□□□□ -0.14
PNKP-218ENST00000625299 CCM2Q9BSQ5 444 aa14.2□□□□□ -0.14
PNKP-218ENST00000625299 HGH1Q9BTY7 390 aa14.2□□□□□ -0.14
PNKP-218ENST00000625299 PACSIN1Q9BY11 444 aa14.2□□□□□ -0.14
PNKP-218ENST00000625299 RUBCNLQ9H714 662 aa14.2□□□□□ -0.14
PNKP-218ENST00000625299 ASB8Q9H765 288 aa14.2□□□□□ -0.14
PNKP-218ENST00000625299 FAM60AQ9NP50 221 aa14.2□□□□□ -0.14
PNKP-218ENST00000625299 TXLNGQ9NUQ3 528 aa14.2□□□□□ -0.14
PNKP-218ENST00000625299 ACTR10Q9NZ32 417 aa14.2□□□□□ -0.14
PNKP-218ENST00000625299 KLHL8Q9P2G9 620 aaPredicted RBP14.2□□□□□ -0.14
PNKP-218ENST00000625299 UVRAGQ9P2Y5 699 aa14.2□□□□□ -0.14
PNKP-218ENST00000625299 ARL5AQ9Y689 179 aa14.2□□□□□ -0.14
PNKP-218ENST00000625299 AP1M2Q9Y6Q5 423 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms