RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 STX7O15400 261 aaKnown RBP12.4□□□□□ -0.42
PNKP-217ENST00000625216 RGS16O15492 202 aaPredicted RBP12.4□□□□□ -0.42
PNKP-217ENST00000625216 DUX1O43812 170 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 SNX2O60749 519 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 VAPBO95292 243 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 CRTAMO95727 393 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 HGFP14210 728 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 HOXB3P14651 431 aaPredicted RBP12.4□□□□□ -0.42
PNKP-217ENST00000625216 VCLP18206 1134 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 XRCC1P18887 633 aaPredicted RBP12.4□□□□□ -0.42
PNKP-217ENST00000625216 PSMA3P25788 255 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 CSTF2P33240 577 aaKnown RBP eCLIP12.4□□□□□ -0.42
PNKP-217ENST00000625216 TMPRSS15P98073 1019 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 PDE1BQ01064 536 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 VAC14Q08AM6 782 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 GPS2Q13227 327 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 CLN3Q13286 438 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 NAB1Q13506 487 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 ITGA9Q13797 1035 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 GTF2H3Q13889 308 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 C16orf72Q14CZ0 275 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 RASA2Q15283 850 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 INSCQ1MX18 579 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 HSP90B2PQ58FF3 399 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 LDLRAP1Q5SW96 308 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 NKAIN2Q5VXU1 208 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 ZNF449Q6P9G9 518 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 ADGRD1Q6QNK2 874 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 WDR74Q6RFH5 385 aaPredicted RBP12.4□□□□□ -0.42
PNKP-217ENST00000625216 ABRAXAS1Q6UWZ7 409 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 WASH2PQ6VEQ5 465 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 MTERF4Q7Z6M4 381 aaKnown RBP12.4□□□□□ -0.42
PNKP-217ENST00000625216 CROCCP2Q86T23 111 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 LRRC6Q86X45 466 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 GOLGA6L1Q8N7Z2 621 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 AGBL5Q8NDL9 886 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 GDAP1Q8TB36 358 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 MZB1Q8WU39 189 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 STYXQ8WUJ0 223 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 ATP6V1G3Q96LB4 118 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 WASH6PQ9NQA3 447 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 PRDM8Q9NQV8 689 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 IARS2Q9NSE4 1012 aaKnown RBP12.4□□□□□ -0.42
PNKP-217ENST00000625216 CPNE7Q9UBL6 633 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 TBK1Q9UHD2 729 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 TMPRSS11EQ9UL52 423 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 PCDHGA3Q9Y5H0 932 aa12.4□□□□□ -0.42
PNKP-217ENST00000625216 DNMT3AQ9Y6K1 912 aaPredicted RBP12.4□□□□□ -0.42
PNKP-217ENST00000625216 ARHGEF17Q96PE2 2063 aaPredicted RBP12.4□□□□□ -0.42
PNKP-217ENST00000625216 GLYATL1P3A0A0U1RQE8 302 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 OR51F1A6NGY5 319 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 LILRA5A6NI73 299 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 PRR19A6NJB7 356 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 THRAP10827 490 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 LIPCP11150 499 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 PAMP19021 973 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 ITIH1P19827 911 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 LPOP22079 712 aaPredicted RBP12.39□□□□□ -0.43
PNKP-217ENST00000625216 IDSP22304 550 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 MSH2P43246 934 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 MAPK10P53779 464 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 UBE2IP63279 158 aaKnown RBP12.39□□□□□ -0.43
PNKP-217ENST00000625216 RHDQ02161 417 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 CFHR1Q03591 330 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 NFATC2Q13469 925 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 LAMB3Q13751 1172 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 CHRNA6Q15825 494 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 HSP90AA5PQ58FG0 334 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 ZNF648Q5T619 568 aaPredicted RBP12.39□□□□□ -0.43
PNKP-217ENST00000625216 TEDDM1Q5T9Z0 273 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 AGAP9Q5VTM2 703 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 PACS1Q6VY07 963 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 NLRP9Q7RTR0 991 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 SLC26A11Q86WA9 606 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 ZNF547Q8IVP9 402 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 CNTN4Q8IWV2 1026 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 RBM12BQ8IXT5 1001 aaKnown RBP12.39□□□□□ -0.43
PNKP-217ENST00000625216 DDHD1Q8NEL9 900 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 OR4K2Q8NGD2 314 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 PEX13Q92968 403 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 USP7Q93009 1102 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 HDAC10Q969S8 669 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 WBP1Q96G27 269 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 ZNF514Q96K75 400 aaPredicted RBP12.39□□□□□ -0.43
PNKP-217ENST00000625216 CCDC74BQ96LY2 380 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 TAAR9Q96RI9 348 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 CCNL2Q96S94 520 aaPredicted RBP12.39□□□□□ -0.43
PNKP-217ENST00000625216 OSGEPL1Q9H4B0 414 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 PPANQ9NQ55 473 aaKnown RBP12.39□□□□□ -0.43
PNKP-217ENST00000625216 NLE1Q9NVX2 485 aaPredicted RBP12.39□□□□□ -0.43
PNKP-217ENST00000625216 SMOXQ9NWM0 555 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 ZFATQ9P243 1243 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 SLC23A2Q9UGH3 650 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 ZNF180Q9UJW8 692 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 NOVA2Q9UNW9 492 aaKnown RBP12.39□□□□□ -0.43
PNKP-217ENST00000625216 PCDHB11Q9Y5F2 797 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 BPTFQ12830 3046 aa12.39□□□□□ -0.43
PNKP-217ENST00000625216 LOC400499M0QZD8 3231 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 CCDC162PA2VCL2 907 aa12.38□□□□□ -0.43
PNKP-217ENST00000625216 KLHL33A6NCF5 533 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms