RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 GLTPD2A6NH11 291 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 TFECO14948 347 aaPredicted RBP10.06□□□□□ -0.8
VPS39-214ENST00000614932 NRP2O60462 931 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 CST8O60676 142 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 CDK1P06493 297 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 CCNYL3P0C7X3 344 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 SFTPCP11686 197 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 HLA-FP30511 346 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 RECQLP46063 649 aaPredicted RBP10.06□□□□□ -0.8
VPS39-214ENST00000614932 BEX3Q00994 111 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 ZNF782Q6ZMW2 699 aaPredicted RBP10.06□□□□□ -0.8
VPS39-214ENST00000614932 FAM35AQ86V20 835 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 CHDHQ8NE62 594 aaPredicted RBP10.06□□□□□ -0.8
VPS39-214ENST00000614932 OR7G3Q8NG95 312 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 OR6P1Q8NGX9 317 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 AGR3Q8TD06 166 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 ELMO1Q92556 727 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 ATOH1Q92858 354 aaPredicted RBP10.06□□□□□ -0.8
VPS39-214ENST00000614932 RPL3LQ92901 407 aaKnown RBP10.06□□□□□ -0.8
VPS39-214ENST00000614932 PPP1R36Q96LQ0 422 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 MRPL45Q9BRJ2 306 aaKnown RBP10.06□□□□□ -0.8
VPS39-214ENST00000614932 CCDC32Q9BV29 185 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 B3GNT5Q9BYG0 378 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 MAGEB5Q9BZ81 275 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 TRIM45Q9H8W5 580 aaPredicted RBP10.06□□□□□ -0.8
VPS39-214ENST00000614932 INTS10Q9NVR2 710 aaKnown RBP10.06□□□□□ -0.8
VPS39-214ENST00000614932 SRRDQ9UH36 339 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 GLS2Q9UI32 602 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 A0A0G2JMZ2 1700 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 SOAT2O75908 522 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 CELF2O95319 508 aaKnown RBP10.06□□□□□ -0.8
VPS39-214ENST00000614932 TSPAN7P41732 249 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 CCT3P49368 545 aaKnown RBP10.06□□□□□ -0.8
VPS39-214ENST00000614932 MEOX2P50222 304 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 GRIK2Q13002 908 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 PLD1Q13393 1074 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 PDK2Q15119 407 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 SURF1Q15526 300 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 CCL14Q16627 93 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 AAK1Q2M2I8 961 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 TMEM198Q66K66 360 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 SEL1L3Q68CR1 1132 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 ALG1LQ6GMV1 187 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 LRFN4Q6PJG9 635 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 TFAP2EQ6VUC0 442 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 HTR3DQ70Z44 454 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 RNF180Q86T96 592 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 XYLT1Q86Y38 959 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 RNF135Q8IUD6 432 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 ZNF366Q8N895 744 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 NETO2Q8NC67 525 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 TRPV3Q8NET8 790 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 PPTC7Q8NI37 304 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 MYRFLQ96LU7 910 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 OR2A14Q96R47 310 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 GAL3ST1Q99999 423 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 ADPGKQ9BRR6 497 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 NXF3Q9H4D5 531 aaKnown RBP10.06□□□□□ -0.8
VPS39-214ENST00000614932 CHRAC1Q9NRG0 131 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 RAPGEFL1Q9UHV5 662 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 TRHDEQ9UKU6 1024 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 PCDHB3Q9Y5E6 796 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 TNPO3Q9Y5L0 923 aaKnown RBP10.06□□□□□ -0.8
VPS39-214ENST00000614932 GNB5O14775 395 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 TSC22D2O75157 780 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 LDOC1O95751 146 aaPredicted RBP10.06□□□□□ -0.8
VPS39-214ENST00000614932 MMP3P08254 477 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 CNTFP26441 200 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 HOXC13P31276 330 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 RABGGTBP53611 331 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 YWHAEP62258 255 aaKnown RBP10.06□□□□□ -0.8
VPS39-214ENST00000614932 DAB2P98082 770 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 DSC1Q08554 894 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 GRM1Q13255 1194 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 ZNF169Q14929 603 aaPredicted RBP10.06□□□□□ -0.8
VPS39-214ENST00000614932 GPR68Q15743 365 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 TAB1Q15750 504 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 ANKRD39Q53RE8 183 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 ARMC4Q5T2S8 1044 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 BEND4Q6ZU67 534 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 RFX6Q8HWS3 928 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 KCTD6Q8NC69 237 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 OR52N1Q8NH53 320 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 ACTL9Q8TC94 416 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 PHOSPHO2Q8TCD6 241 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 SCYL1Q96KG9 808 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 DCLRE1CQ96SD1 692 aaKnown RBP10.06□□□□□ -0.8
VPS39-214ENST00000614932 ILKAPQ9H0C8 392 aaPredicted RBP10.06□□□□□ -0.8
VPS39-214ENST00000614932 KAT8Q9H7Z6 458 aaKnown RBP10.06□□□□□ -0.8
VPS39-214ENST00000614932 C14orf119Q9NWQ9 140 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 CACNA2D2Q9NY47 1150 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 TRPM5Q9NZQ8 1165 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 BFARQ9NZS9 450 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 REV1Q9UBZ9 1251 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 TSPAN16Q9UKR8 245 aa10.06□□□□□ -0.8
VPS39-214ENST00000614932 LOC285556D6RIA3 1793 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 hCG_1818297A0A087WSY0 165 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 CCDC78A2IDD5 438 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 LRRC37A2A6NM11 1700 aa10.05□□□□□ -0.8
VPS39-214ENST00000614932 EFCAB9A8MZ26 197 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms