RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 NCS1P62166 190 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 RUNX1T1Q06455 604 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 RFX4Q33E94 735 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 ARMC4Q5T2S8 1044 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 DOK6Q6PKX4 331 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 SPARTQ8N0X7 666 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 TTC30BQ8N4P2 665 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 KRTCAP2Q8N6L1 136 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 NLGN2Q8NFZ4 835 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 SH3RF2Q8TEC5 729 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 CHCHD6Q9BRQ6 235 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 EHD3Q9NZN3 535 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 A0A1B0GTL3 188 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 TFECO14948 347 aaPredicted RBP12.39□□□□□ -0.43
LIG1-221ENST00000613670 GPR39O43194 453 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 CYP7B1O75881 506 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 COX7A2P14406 83 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 TACR2P21452 398 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 DCKP27707 260 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 KCNQ1P51787 676 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 PARP15Q460N3 678 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 RNF219Q5W0B1 726 aaPredicted RBP12.39□□□□□ -0.43
LIG1-221ENST00000613670 OR5K1Q8NHB7 308 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 DERL2Q9GZP9 239 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 MAGEE1Q9HCI5 957 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 PCDHGA11Q9Y5H2 935 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 DYTNA2CJ06 578 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 IQCA1LA6NCM1 817 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 TAF4O00268 1085 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 AIREO43918 545 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 EEDO75530 441 aaKnown RBP12.39□□□□□ -0.43
LIG1-221ENST00000613670 SCELO95171 688 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 EPN2O95208 641 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 F2P00734 622 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 CYP11A1P05108 521 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 CCL14Q16627 93 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 RFTN2Q52LD8 501 aaPredicted RBP12.39□□□□□ -0.43
LIG1-221ENST00000613670 ANKRD34AQ69YU3 496 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 GATAD2AQ86YP4 633 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 C2orf69Q8N8R5 385 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 VPS37AQ8NEZ2 397 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 HDAC2Q92769 488 aaKnown RBP12.39□□□□□ -0.43
LIG1-221ENST00000613670 FUBP1Q96AE4 644 aaKnown RBP12.39□□□□□ -0.43
LIG1-221ENST00000613670 PGAP3Q96FM1 320 aaPredicted RBP12.39□□□□□ -0.43
LIG1-221ENST00000613670 EBPLQ9BY08 206 aa12.39□□□□□ -0.43
LIG1-221ENST00000613670 UBR3Q6ZT12 1888 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 EFCAB9A8MZ26 197 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 FXYD1O00168 92 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 FFAR2O15552 330 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 MATN4O95460 622 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 PGRP06401 933 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 FGF4P08620 206 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 IL12AP29459 219 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 ADRA1AP35348 466 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 NUDT6P53370 316 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 DUSP4Q13115 394 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 RCAN2Q14206 197 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 SMYD5Q6GMV2 418 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 CES5AQ6NT32 575 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 PSAPL1Q6NUJ1 521 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 TRAF7Q6Q0C0 670 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 ALDH16A1Q8IZ83 802 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 ZFP90Q8TF47 636 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 FAR1Q8WVX9 515 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 PYCR2Q96C36 320 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 TPK1Q9H3S4 243 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 KAT8Q9H7Z6 458 aaKnown RBP12.38□□□□□ -0.43
LIG1-221ENST00000613670 VAPAQ9P0L0 249 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 NUP214P35658 2090 aaPredicted RBP12.38□□□□□ -0.43
LIG1-221ENST00000613670 ZNF701M0R085 212 aaPredicted RBP12.38□□□□□ -0.43
LIG1-221ENST00000613670 LDB2O43679 373 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 CREG1O75629 220 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 DGKAP23743 735 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 SOX6P35712 828 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 ERVPABLB-1P60509 514 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 ADAM17P78536 824 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 EMX2Q04743 252 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 ILF2Q12905 390 aaKnown RBP12.38□□□□□ -0.43
LIG1-221ENST00000613670 TUBA3CQ13748 450 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 SEMA3AQ14563 771 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 ZNF605Q86T29 641 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 COLGALT2Q8IYK4 626 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 SVOPLQ8N434 492 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 TUBA1CQ9BQE3 449 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 TLR6Q9Y2C9 796 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 SLC1A7O00341 560 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 INSIG1O15503 277 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 ITGB1P05556 798 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 ITPKAP23677 461 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 HTR7P34969 479 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 HPCAL1P37235 193 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 YBEYP58557 167 aaPredicted RBP12.38□□□□□ -0.43
LIG1-221ENST00000613670 ABRAXAS2Q15018 415 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 MED22Q15528 200 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 INO80DQ53TQ3 878 aaPredicted RBP12.38□□□□□ -0.43
LIG1-221ENST00000613670 ALKAL1Q6UXT8 129 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 AGMOQ6ZNB7 445 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 GOLGA7Q7Z5G4 137 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 RHEBL1Q8TAI7 183 aa12.38□□□□□ -0.43
LIG1-221ENST00000613670 OGDHLQ9ULD0 1010 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms