RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 EMP3P54852 163 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 DCDP81605 110 aaKnown RBP6.11□□□□□ -1.43
CUX1-220ENST00000607092 PLOD1Q02809 727 aaPredicted RBP6.11□□□□□ -1.43
CUX1-220ENST00000607092 ZBTB17Q13105 803 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 AIMP2Q13155 320 aaKnown RBP6.11□□□□□ -1.43
CUX1-220ENST00000607092 MPP3Q13368 585 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 ATP1A4Q13733 1029 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 IHHQ14623 411 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 GPR19Q15760 415 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 PCSK7Q16549 785 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.11□□□□□ -1.432e-6■■■■■ 31.5
CUX1-220ENST00000607092 BCL7AQ4VC05 210 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 ZNF648Q5T619 568 aaPredicted RBP6.11□□□□□ -1.43
CUX1-220ENST00000607092 GPRC6AQ5T6X5 926 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 ZNF787Q6DD87 383 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 TXNRD3NBQ6F5E7 133 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 TLDC1Q6P9B6 456 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 Q6ZS92 163 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 B4GALNT4Q76KP1 1039 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 GLT6D1Q7Z4J2 308 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 DAAM2Q86T65 1068 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 RHOT2Q8IXI1 618 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 ZBTB2Q8N680 514 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 PQLC3Q8N755 202 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 RASGEF1AQ8N9B8 481 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 GPR150Q8NGU9 434 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 OR2Y1Q8NGV0 311 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 ZNF398Q8TD17 642 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 PPP4R1Q8TF05 950 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 CPLX3Q8WVH0 158 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 DLG3Q92796 817 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 TADA1Q96BN2 335 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 EID2BQ96D98 161 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 TCTN2Q96GX1 697 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 TEKT5Q96M29 485 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 BARD1Q99728 777 aaKnown RBP6.11□□□□□ -1.43
CUX1-220ENST00000607092 WDR77Q9BQA1 342 aaPredicted RBP6.11□□□□□ -1.43
CUX1-220ENST00000607092 FSD1LQ9BXM9 530 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 WWP1Q9H0M0 922 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 TFB2MQ9H5Q4 396 aaKnown RBP6.11□□□□□ -1.43
CUX1-220ENST00000607092 EPS8L2Q9H6S3 715 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 MRM3Q9HC36 420 aaKnown RBP6.11□□□□□ -1.43
CUX1-220ENST00000607092 TXLNGQ9NUQ3 528 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 ASF1BQ9NVP2 202 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 IL17CQ9P0M4 197 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 IFT80Q9P2H3 777 aaPredicted RBP6.11□□□□□ -1.43
CUX1-220ENST00000607092 NXT1Q9UKK6 140 aaKnown RBP6.11□□□□□ -1.43
CUX1-220ENST00000607092 TRHDEQ9UKU6 1024 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 PSMD13Q9UNM6 376 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 WDR37Q9Y2I8 494 aa6.11□□□□□ -1.43
CUX1-220ENST00000607092 LUC7L2Q9Y383 392 aaKnown RBP6.11□□□□□ -1.43
CUX1-220ENST00000607092 MAP1AP78559 2803 aaPredicted RBP6.11□□□□□ -1.43
CUX1-220ENST00000607092 NIPBLQ6KC79 2804 aaeCLIP6.11□□□□□ -1.433e-10■■■■■ 76.4
CUX1-220ENST00000607092 ZNF106Q9H2Y7 1883 aaKnown RBP6.11□□□□□ -1.43
CUX1-220ENST00000607092 ABCA2Q9BZC7 2435 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 OR2AG2A6NM03 316 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 ZNF749O43361 778 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 OR2B3O76000 313 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 STK10O94804 968 aaKnown RBP6.1□□□□□ -1.43
CUX1-220ENST00000607092 PRAMEF1O95521 474 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 CRTAMO95727 393 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 CLDN1O95832 211 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 ALBP02768 609 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 SKILP12757 684 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 EDN3P14138 238 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 POLR2CP19387 275 aaPredicted RBP6.1□□□□□ -1.43
CUX1-220ENST00000607092 ITGALP20701 1170 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 PRDX3P30048 256 aaKnown RBP6.1□□□□□ -1.43
CUX1-220ENST00000607092 OTX2P32243 289 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 SHMT2P34897 504 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 TSFMP43897 325 aaKnown RBP6.1□□□□□ -1.43
CUX1-220ENST00000607092 KPNA2P52292 529 aaKnown RBP6.1□□□□□ -1.43
CUX1-220ENST00000607092 ARSFP54793 590 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 WNT3AP56704 352 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 AP2B1P63010 937 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 TYRO3Q06418 890 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 SLC10A2Q12908 348 aaPredicted RBP6.1□□□□□ -1.43
CUX1-220ENST00000607092 NFE2L1Q14494 772 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 TLR1Q15399 786 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 INAQ16352 499 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 PLEKHN1Q494U1 663 aaPredicted RBP6.1□□□□□ -1.43
CUX1-220ENST00000607092 GPR33Q49SQ1 333 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 AGAP7PQ5VUJ5 663 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 YOD1Q5VVQ6 348 aaPredicted RBP6.1□□□□□ -1.43
CUX1-220ENST00000607092 MLIPQ5VWP3 458 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 HGSNATQ68CP4 663 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 ITPRIPL1Q6GPH6 555 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 DESI1Q6ICB0 168 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 RHBDD2Q6NTF9 364 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 BLOC1S3Q6QNY0 202 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 FAM198BQ6UWH4 519 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 LYPD8Q6UX82 237 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 FAM151BQ6UXP7 276 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 RFX6Q8HWS3 928 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 TTC30BQ8N4P2 665 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 CISD2Q8N5K1 135 aaKnown RBP6.1□□□□□ -1.43
CUX1-220ENST00000607092 PLD5Q8N7P1 536 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 OR4E2Q8NGC2 313 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 OR1L3Q8NH93 324 aa6.1□□□□□ -1.43
CUX1-220ENST00000607092 BLOC1S5Q8TDH9 187 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms