RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 ZDHHC3Q9NYG2 299 aa17.09■□□□□ 0.33
SHKBP1-223ENST00000600552 SNX7Q9UNH6 387 aa17.09■□□□□ 0.33
SHKBP1-223ENST00000600552 COL12A1Q99715 3063 aa17.08■□□□□ 0.33
SHKBP1-223ENST00000600552 MAST4O15021 2626 aa17.08■□□□□ 0.33
SHKBP1-223ENST00000600552 MED13Q9UHV7 2174 aa17.08■□□□□ 0.33
SHKBP1-223ENST00000600552 KLHL33A6NCF5 533 aa17.08■□□□□ 0.32
SHKBP1-223ENST00000600552 A6NL46 340 aa17.08■□□□□ 0.32
SHKBP1-223ENST00000600552 MEN1O00255 615 aa17.08■□□□□ 0.32
SHKBP1-223ENST00000600552 BTN3A3O00478 584 aa17.08■□□□□ 0.32
SHKBP1-223ENST00000600552 BTN3A1O00481 513 aa17.08■□□□□ 0.32
SHKBP1-223ENST00000600552 PRDX3P30048 256 aaKnown RBP17.08■□□□□ 0.32
SHKBP1-223ENST00000600552 PTGIRP43119 386 aa17.08■□□□□ 0.32
SHKBP1-223ENST00000600552 PRLHRP49683 370 aa17.08■□□□□ 0.32
SHKBP1-223ENST00000600552 ABRQ12979 859 aa17.08■□□□□ 0.32
SHKBP1-223ENST00000600552 PTCHD3Q3KNS1 767 aa17.08■□□□□ 0.32
SHKBP1-223ENST00000600552 PLEKHS1Q5SXH7 462 aa17.08■□□□□ 0.32
SHKBP1-223ENST00000600552 HOOK3Q86VS8 718 aa17.08■□□□□ 0.32
SHKBP1-223ENST00000600552 ACRBPQ8NEB7 543 aa17.08■□□□□ 0.32
SHKBP1-223ENST00000600552 OR8K5Q8NH50 307 aa17.08■□□□□ 0.32
SHKBP1-223ENST00000600552 OR1L3Q8NH93 324 aa17.08■□□□□ 0.32
SHKBP1-223ENST00000600552 HEXDCQ8WVB3 486 aa17.08■□□□□ 0.32
SHKBP1-223ENST00000600552 CPT1BQ92523 772 aa17.08■□□□□ 0.32
SHKBP1-223ENST00000600552 ALG3Q92685 438 aa17.08■□□□□ 0.32
SHKBP1-223ENST00000600552 ING2Q9H160 280 aa17.08■□□□□ 0.32
SHKBP1-223ENST00000600552 ACTR5Q9H9F9 607 aaPredicted RBP17.08■□□□□ 0.32
SHKBP1-223ENST00000600552 SMARCAL1Q9NZC9 954 aa17.08■□□□□ 0.32
SHKBP1-223ENST00000600552 POMT2Q9UKY4 750 aa17.08■□□□□ 0.32
SHKBP1-223ENST00000600552 LDB2O43679 373 aa17.07■□□□□ 0.32
SHKBP1-223ENST00000600552 ST6GAL1P15907 406 aa17.07■□□□□ 0.32
SHKBP1-223ENST00000600552 GSDMDP57764 484 aa17.07■□□□□ 0.32
SHKBP1-223ENST00000600552 SRSF1Q07955 248 aaKnown RBP eCLIP17.07■□□□□ 0.32
SHKBP1-223ENST00000600552 MSLNQ13421 630 aaPredicted RBP17.07■□□□□ 0.32
SHKBP1-223ENST00000600552 NADK2Q4G0N4 442 aa17.07■□□□□ 0.32
SHKBP1-223ENST00000600552 SARM1Q6SZW1 724 aa17.07■□□□□ 0.32
SHKBP1-223ENST00000600552 NAPRTQ6XQN6 538 aa17.07■□□□□ 0.32
SHKBP1-223ENST00000600552 KIAA1328Q86T90 577 aa17.07■□□□□ 0.32
SHKBP1-223ENST00000600552 TRIM73Q86UV7 250 aa17.07■□□□□ 0.32
SHKBP1-223ENST00000600552 EFCAB3Q8N7B9 438 aa17.07■□□□□ 0.32
SHKBP1-223ENST00000600552 OR52E1Q8NGJ3 308 aa17.07■□□□□ 0.32
SHKBP1-223ENST00000600552 THAP4Q8WY91 577 aa17.07■□□□□ 0.32
SHKBP1-223ENST00000600552 SEC14L1Q92503 715 aa17.07■□□□□ 0.32
SHKBP1-223ENST00000600552 N4BP2L2Q92802 583 aaPredicted RBP17.07■□□□□ 0.32
SHKBP1-223ENST00000600552 MIB2Q96AX9 1013 aa17.07■□□□□ 0.32
SHKBP1-223ENST00000600552 MFRPQ9BY79 579 aa17.07■□□□□ 0.32
SHKBP1-223ENST00000600552 VPS37BQ9H9H4 285 aa17.07■□□□□ 0.32
SHKBP1-223ENST00000600552 C1GALT1Q9NS00 363 aa17.07■□□□□ 0.32
SHKBP1-223ENST00000600552 LUZP4Q9P127 313 aa17.07■□□□□ 0.32
SHKBP1-223ENST00000600552 MAP10Q9P2G4 905 aa17.07■□□□□ 0.32
SHKBP1-223ENST00000600552 SERTAD3Q9UJW9 196 aa17.07■□□□□ 0.32
SHKBP1-223ENST00000600552 PACSIN2Q9UNF0 486 aaPredicted RBP17.07■□□□□ 0.32
SHKBP1-223ENST00000600552 BTRCQ9Y297 605 aa17.07■□□□□ 0.32
SHKBP1-223ENST00000600552 EFR3BQ9Y2G0 817 aa17.07■□□□□ 0.32
SHKBP1-223ENST00000600552 GOLGA6L9A6NEM1 432 aa17.06■□□□□ 0.32
SHKBP1-223ENST00000600552 ZNF185O15231 689 aa17.06■□□□□ 0.32
SHKBP1-223ENST00000600552 RECKO95980 971 aa17.06■□□□□ 0.32
SHKBP1-223ENST00000600552 ACRV1P26436 265 aa17.06■□□□□ 0.32
SHKBP1-223ENST00000600552 GPR33Q49SQ1 333 aa17.06■□□□□ 0.32
SHKBP1-223ENST00000600552 AMIGO1Q86WK6 493 aa17.06■□□□□ 0.32
SHKBP1-223ENST00000600552 TMTC1Q8IUR5 882 aa17.06■□□□□ 0.32
SHKBP1-223ENST00000600552 APLFQ8IW19 511 aaPredicted RBP17.06■□□□□ 0.32
SHKBP1-223ENST00000600552 DSELQ8IZU8 1212 aa17.06■□□□□ 0.32
SHKBP1-223ENST00000600552 TFGQ92734 400 aaPredicted RBP17.06■□□□□ 0.32
SHKBP1-223ENST00000600552 PPP1R2P1Q96PQ5 205 aa17.06■□□□□ 0.32
SHKBP1-223ENST00000600552 LACRTQ9GZZ8 138 aa17.06■□□□□ 0.32
SHKBP1-223ENST00000600552 OR52A5Q9H2C5 316 aa17.06■□□□□ 0.32
SHKBP1-223ENST00000600552 AMFRQ9UKV5 643 aa17.06■□□□□ 0.32
SHKBP1-223ENST00000600552 TDRKHQ9Y2W6 561 aaKnown RBP17.06■□□□□ 0.32
SHKBP1-223ENST00000600552 PIKFYVEQ9Y2I7 2098 aa17.06■□□□□ 0.32
SHKBP1-223ENST00000600552 C17orf113A0A1B0GUU1 675 aa17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 GRID2IPA4D2P6 1211 aa17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 OR51F1A6NGY5 319 aa17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 AGAP14A8MT82 685 aa17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 C2orf74A8MZ97 194 aa17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 VPS4BO75351 444 aa17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 METTL18O95568 372 aa17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 PTPN7P35236 360 aa17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 UQCRFS1P47985 274 aa17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 ZNF75DP51815 510 aa17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 CSE1LP55060 971 aaKnown RBP17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 RAPSNQ13702 412 aa17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 DBN1Q16643 649 aa17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 PARP6Q2NL67 630 aa17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 CCDC38Q502W7 563 aa17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 RAD9BQ6WBX8 426 aa17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 PEX26Q7Z412 305 aa17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 PIANPQ8IYJ0 282 aa17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 SYTL1Q8IYJ3 562 aa17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 FAM26EQ8N5C1 309 aa17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 TRAPPC9Q96Q05 1148 aa17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 PANX2Q96RD6 677 aa17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 MVB12BQ9H7P6 319 aa17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 NLE1Q9NVX2 485 aaPredicted RBP17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 IRAK4Q9NWZ3 460 aa17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 ACTR10Q9NZ32 417 aa17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 FEZ2Q9UHY8 353 aaPredicted RBP17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 VPS4AQ9UN37 437 aa17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 REXO2Q9Y3B8 237 aaKnown RBP17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 PRSS21Q9Y6M0 314 aa17.05■□□□□ 0.32
SHKBP1-223ENST00000600552 SEC16AO15027 2179 aa17.04■□□□□ 0.32
SHKBP1-223ENST00000600552 BLACEA4D250 179 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms