RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 PRKAB1Q9Y478 270 aa20.15■□□□□ 0.82
UPF1-207ENST00000599848 MYBPHLA2RUH7 354 aa20.15■□□□□ 0.82
UPF1-207ENST00000599848 NRP2O60462 931 aa20.15■□□□□ 0.82
UPF1-207ENST00000599848 PAPSS2O95340 614 aaPredicted RBP20.15■□□□□ 0.82
UPF1-207ENST00000599848 PRKAR1AP10644 381 aa20.15■□□□□ 0.82
UPF1-207ENST00000599848 MAPK11Q15759 364 aa20.15■□□□□ 0.82
UPF1-207ENST00000599848 MLIPQ5VWP3 458 aa20.15■□□□□ 0.82
UPF1-207ENST00000599848 PXYLP1Q8TE99 480 aa20.15■□□□□ 0.82
UPF1-207ENST00000599848 CMTM7Q96FZ5 175 aa20.15■□□□□ 0.82
UPF1-207ENST00000599848 Q9N2J8 555 aa20.15■□□□□ 0.82
UPF1-207ENST00000599848 TMEM131LA2VDJ0 1609 aa20.15■□□□□ 0.82
UPF1-207ENST00000599848 C2P06681 752 aa20.15■□□□□ 0.82
UPF1-207ENST00000599848 DDI2Q5TDH0 399 aa20.15■□□□□ 0.82
UPF1-207ENST00000599848 TCRBV9S1A1TA0A576 114 aa20.15■□□□□ 0.82
UPF1-207ENST00000599848 CTSKP43235 329 aa20.15■□□□□ 0.82
UPF1-207ENST00000599848 SUOXP51687 545 aa20.15■□□□□ 0.82
UPF1-207ENST00000599848 SRP54P61011 504 aaKnown RBP20.15■□□□□ 0.82
UPF1-207ENST00000599848 FBXO43Q4G163 708 aa20.15■□□□□ 0.82
UPF1-207ENST00000599848 ARSIQ5FYB1 569 aa20.15■□□□□ 0.82
UPF1-207ENST00000599848 LRRC69Q6ZNQ3 347 aa20.15■□□□□ 0.82
UPF1-207ENST00000599848 TMEM126BQ8IUX1 230 aa20.15■□□□□ 0.82
UPF1-207ENST00000599848 C2orf73Q8N5S3 287 aaPredicted RBP20.15■□□□□ 0.82
UPF1-207ENST00000599848 PNLDC1Q8NA58 520 aaKnown RBP20.15■□□□□ 0.82
UPF1-207ENST00000599848 WASF3Q9UPY6 502 aa20.15■□□□□ 0.82
UPF1-207ENST00000599848 CRHR1P34998 444 aa20.14■□□□□ 0.82
UPF1-207ENST00000599848 DECR1Q16698 335 aa20.14■□□□□ 0.82
UPF1-207ENST00000599848 PDCD5O14737 125 aa20.14■□□□□ 0.81
UPF1-207ENST00000599848 FABP3P05413 133 aa20.14■□□□□ 0.81
UPF1-207ENST00000599848 SYVN1Q86TM6 617 aa20.14■□□□□ 0.81
UPF1-207ENST00000599848 CLEC4DQ8WXI8 215 aa20.14■□□□□ 0.81
UPF1-207ENST00000599848 NR4A3Q92570 626 aa20.14■□□□□ 0.81
UPF1-207ENST00000599848 NKD2Q969F2 451 aaPredicted RBP20.14■□□□□ 0.81
UPF1-207ENST00000599848 NOL11Q9H8H0 719 aaKnown RBP20.14■□□□□ 0.81
UPF1-207ENST00000599848 C1orf109Q9NX04 203 aa20.14■□□□□ 0.81
UPF1-207ENST00000599848 IDH3BO43837 385 aa20.14■□□□□ 0.81
UPF1-207ENST00000599848 CLCQ05315 142 aa20.14■□□□□ 0.81
UPF1-207ENST00000599848 PRAMEF14Q5SWL7 426 aa20.14■□□□□ 0.81
UPF1-207ENST00000599848 PRAMEF13Q5VWM6 474 aa20.14■□□□□ 0.81
UPF1-207ENST00000599848 IL22RA1Q8N6P7 574 aa20.14■□□□□ 0.81
UPF1-207ENST00000599848 PLD5Q8N7P1 536 aa20.14■□□□□ 0.81
UPF1-207ENST00000599848 RMI1Q9H9A7 625 aa20.14■□□□□ 0.81
UPF1-207ENST00000599848 MED31Q9Y3C7 131 aa20.14■□□□□ 0.81
UPF1-207ENST00000599848 APBB3O95704 486 aa20.14■□□□□ 0.81
UPF1-207ENST00000599848 ERCC1P07992 297 aaPredicted RBP20.14■□□□□ 0.81
UPF1-207ENST00000599848 ZCCHC18P0CG32 403 aa20.14■□□□□ 0.81
UPF1-207ENST00000599848 HNRNPH3P31942 346 aaKnown RBP20.14■□□□□ 0.81
UPF1-207ENST00000599848 QPRTQ15274 297 aa20.14■□□□□ 0.81
UPF1-207ENST00000599848 UBASH3BQ8TF42 649 aa20.14■□□□□ 0.81
UPF1-207ENST00000599848 PELOQ9BRX2 385 aaKnown RBP20.14■□□□□ 0.81
UPF1-207ENST00000599848 FARSBQ9NSD9 589 aaKnown RBP20.14■□□□□ 0.81
UPF1-207ENST00000599848 A0A0J9YYE9 177 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 VGLL3A8MV65 326 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 SCDO00767 359 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 ZNF217O75362 1048 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 MT-CYBP00156 380 aaPredicted RBP20.13■□□□□ 0.81
UPF1-207ENST00000599848 HNRNPLP14866 589 aaKnown RBP eCLIP20.13■□□□□ 0.81
UPF1-207ENST00000599848 FOSL2P15408 326 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 GDI2P50395 445 aaKnown RBP20.13■□□□□ 0.81
UPF1-207ENST00000599848 FOXK1P85037 733 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 METTL21CQ5VZV1 264 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 SMYD5Q6GMV2 418 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 SPOCK2Q92563 424 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 OSBPL11Q9BXB4 747 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 WDR6Q9NNW5 1121 aaKnown RBP20.13■□□□□ 0.81
UPF1-207ENST00000599848 KLRF1Q9NZS2 232 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 UPB1Q9UBR1 384 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 FKBPLQ9UIM3 349 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 FZD10Q9ULW2 581 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 AK5Q9Y6K8 562 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 GRXCR2A6NFK2 248 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 SSNA1O43805 119 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 GOT2P00505 430 aaKnown RBP20.13■□□□□ 0.81
UPF1-207ENST00000599848 ARHGAP1Q07960 439 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 SLC22A15Q8IZD6 547 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 PIGKQ92643 395 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP20.13■□□□□ 0.812e-6■□□□□ 10.6
UPF1-207ENST00000599848 IGSF9Q9P2J2 1179 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 ELOVL7A1L3X0 281 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 ARHGEF33A8MVX0 844 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 TAS2R40P59535 323 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 C10orf62Q5T681 223 aaPredicted RBP20.13■□□□□ 0.81
UPF1-207ENST00000599848 FRRS1Q6ZNA5 592 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 RPL10LQ96L21 214 aaKnown RBP20.13■□□□□ 0.81
UPF1-207ENST00000599848 TUBGCP5Q96RT8 1024 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 ELAC1Q9H777 363 aaKnown RBP20.13■□□□□ 0.81
UPF1-207ENST00000599848 DNMT3AQ9Y6K1 912 aaPredicted RBP20.13■□□□□ 0.81
UPF1-207ENST00000599848 DGKBQ9Y6T7 804 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 NUDT17P0C025 328 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 DLG1Q12959 904 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 CAND1Q86VP6 1230 aaKnown RBP20.13■□□□□ 0.81
UPF1-207ENST00000599848 S100ZQ8WXG8 99 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 GPATCH1Q9BRR8 931 aaKnown RBP20.13■□□□□ 0.81
UPF1-207ENST00000599848 RTKNQ9BST9 563 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 ZNF180Q9UJW8 692 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 OGDHLQ9ULD0 1010 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 SCML2Q9UQR0 700 aa20.13■□□□□ 0.81
UPF1-207ENST00000599848 HYKKA2RU49 373 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 SOX30O94993 753 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 DCKP27707 260 aa20.12■□□□□ 0.81
UPF1-207ENST00000599848 RYKP34925 604 aa20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms