RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 FDXRP22570 491 aa16.16■□□□□ 0.18
SHKBP1-219ENST00000599575 CNTFP26441 200 aa16.16■□□□□ 0.18
SHKBP1-219ENST00000599575 LIMK2P53671 638 aa16.16■□□□□ 0.18
SHKBP1-219ENST00000599575 SLC12A2P55011 1212 aa16.16■□□□□ 0.18
SHKBP1-219ENST00000599575 VSNL1P62760 191 aa16.16■□□□□ 0.18
SHKBP1-219ENST00000599575 FAM153CQ494X1 144 aa16.16■□□□□ 0.18
SHKBP1-219ENST00000599575 PPM1JQ5JR12 505 aa16.16■□□□□ 0.18
SHKBP1-219ENST00000599575 HECTD2Q5U5R9 776 aa16.16■□□□□ 0.18
SHKBP1-219ENST00000599575 TTC23LQ6PF05 361 aa16.16■□□□□ 0.18
SHKBP1-219ENST00000599575 TAOK1Q7L7X3 1001 aa16.16■□□□□ 0.18
SHKBP1-219ENST00000599575 SPRED1Q7Z699 444 aa16.16■□□□□ 0.18
SHKBP1-219ENST00000599575 GPATCH11Q8N954 259 aa16.16■□□□□ 0.18
SHKBP1-219ENST00000599575 ACVR1CQ8NER5 493 aa16.16■□□□□ 0.18
SHKBP1-219ENST00000599575 SPDYE1Q8NFV5 336 aaPredicted RBP16.16■□□□□ 0.18
SHKBP1-219ENST00000599575 OR10G6Q8NH81 332 aa16.16■□□□□ 0.18
SHKBP1-219ENST00000599575 OR5K2Q8NHB8 316 aa16.16■□□□□ 0.18
SHKBP1-219ENST00000599575 CD200R1Q8TD46 325 aa16.16■□□□□ 0.18
SHKBP1-219ENST00000599575 ANKRD7Q92527 254 aa16.16■□□□□ 0.18
SHKBP1-219ENST00000599575 GPR21Q99679 349 aa16.16■□□□□ 0.18
SHKBP1-219ENST00000599575 GPR22Q99680 433 aa16.16■□□□□ 0.18
SHKBP1-219ENST00000599575 TRIT1Q9H3H1 467 aaKnown RBP16.16■□□□□ 0.18
SHKBP1-219ENST00000599575 SYTL2Q9HCH5 934 aa16.16■□□□□ 0.18
SHKBP1-219ENST00000599575 KCNK4Q9NYG8 393 aa16.16■□□□□ 0.18
SHKBP1-219ENST00000599575 ZNF180Q9UJW8 692 aa16.16■□□□□ 0.18
SHKBP1-219ENST00000599575 TDRD6O60522 2096 aaKnown RBP16.15■□□□□ 0.18
SHKBP1-219ENST00000599575 FAM95CA0A1B0GW59 222 aa16.15■□□□□ 0.18
SHKBP1-219ENST00000599575 TMX2-CTNND1H3BSU7 103 aa16.15■□□□□ 0.18
SHKBP1-219ENST00000599575 OPA1O60313 960 aa16.15■□□□□ 0.18
SHKBP1-219ENST00000599575 MATN4O95460 622 aa16.15■□□□□ 0.18
SHKBP1-219ENST00000599575 MPC1LP0DKB6 136 aa16.15■□□□□ 0.18
SHKBP1-219ENST00000599575 MYBL2P10244 700 aa16.15■□□□□ 0.18
SHKBP1-219ENST00000599575 SERPINB9P50453 376 aa16.15■□□□□ 0.18
SHKBP1-219ENST00000599575 PDAP1Q13442 181 aaKnown RBP16.15■□□□□ 0.18
SHKBP1-219ENST00000599575 MAP9Q49MG5 647 aa16.15■□□□□ 0.18
SHKBP1-219ENST00000599575 LGSNQ5TDP6 509 aa16.15■□□□□ 0.18
SHKBP1-219ENST00000599575 DGLUCYQ7Z3D6 616 aa16.15■□□□□ 0.18
SHKBP1-219ENST00000599575 SFTPA2Q8IWL1 248 aa16.15■□□□□ 0.18
SHKBP1-219ENST00000599575 GALNT15Q8N3T1 639 aa16.15■□□□□ 0.18
SHKBP1-219ENST00000599575 PDLIM5Q96HC4 596 aaKnown RBP16.15■□□□□ 0.18
SHKBP1-219ENST00000599575 TFB2MQ9H5Q4 396 aaKnown RBP16.15■□□□□ 0.18
SHKBP1-219ENST00000599575 SLC17A6Q9P2U8 582 aa16.15■□□□□ 0.18
SHKBP1-219ENST00000599575 ASF1AQ9Y294 204 aa16.15■□□□□ 0.18
SHKBP1-219ENST00000599575 CNOT1A5YKK6 2376 aaKnown RBP16.15■□□□□ 0.18
SHKBP1-219ENST00000599575 PCNX2A6NKB5 2137 aa16.15■□□□□ 0.18
SHKBP1-219ENST00000599575 TRBV23OR9-2A0A075B6M9 112 aa16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 IGHV1OR21-1A0A087WYE8 117 aa16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 MATN2O00339 956 aa16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 NTN3O00634 580 aaPredicted RBP16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 GIPC1O14908 333 aa16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 DUX1O43812 170 aa16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 KRT38O76015 456 aa16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 CPNE6O95741 557 aa16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 INHBAP08476 426 aa16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 SLC26A3P40879 764 aa16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 CDKN2DP55273 166 aa16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 IL2P60568 153 aa16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 GPR18Q14330 331 aa16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 BRD3Q15059 726 aa16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 PERM1Q5SV97 790 aa16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 RBM20Q5T481 1227 aaKnown RBP16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 WDR74Q6RFH5 385 aaPredicted RBP16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 SLCO6A1Q86UG4 719 aa16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 TMPRSS12Q86WS5 348 aa16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 DCUN1D3Q8IWE4 304 aa16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 NKAPQ8N5F7 415 aaKnown RBP16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 SIDT2Q8NBJ9 832 aaKnown RBP16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 FBXO15Q8NCQ5 510 aaPredicted RBP16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 SLC44A1Q8WWI5 657 aa16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 CAVIN3Q969G5 261 aa16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 ELMO2Q96JJ3 720 aa16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 FERD3LQ96RJ6 166 aa16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 NDNQ99608 321 aa16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 PARD6BQ9BYG5 372 aa16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 RAB33BQ9H082 229 aa16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 LRRN3Q9H3W5 708 aa16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 SLC24A2Q9UI40 661 aa16.14■□□□□ 0.17
SHKBP1-219ENST00000599575 EXOC1LA0A1B0GW35 172 aa16.13■□□□□ 0.17
SHKBP1-219ENST00000599575 B4GAT1O43505 415 aa16.13■□□□□ 0.17
SHKBP1-219ENST00000599575 CATP04040 527 aaKnown RBP16.13■□□□□ 0.17
SHKBP1-219ENST00000599575 ITGA2BP08514 1039 aa16.13■□□□□ 0.17
SHKBP1-219ENST00000599575 MYF5P13349 255 aa16.13■□□□□ 0.17
SHKBP1-219ENST00000599575 STMN1P16949 149 aa16.13■□□□□ 0.17
SHKBP1-219ENST00000599575 CRABP2P29373 138 aa16.13■□□□□ 0.17
SHKBP1-219ENST00000599575 ALDH4A1P30038 563 aa16.13■□□□□ 0.17
SHKBP1-219ENST00000599575 MSH2P43246 934 aa16.13■□□□□ 0.17
SHKBP1-219ENST00000599575 TIAL1Q01085 375 aaKnown RBP eCLIP16.13■□□□□ 0.17
SHKBP1-219ENST00000599575 SPIDRQ14159 915 aa16.13■□□□□ 0.17
SHKBP1-219ENST00000599575 SLC29A2Q14542 456 aa16.13■□□□□ 0.17
SHKBP1-219ENST00000599575 ERMP1Q7Z2K6 904 aa16.13■□□□□ 0.17
SHKBP1-219ENST00000599575 VRK3Q8IV63 474 aa16.13■□□□□ 0.17
SHKBP1-219ENST00000599575 RAB42Q8N4Z0 105 aa16.13■□□□□ 0.17
SHKBP1-219ENST00000599575 GIMAP7Q8NHV1 300 aa16.13■□□□□ 0.17
SHKBP1-219ENST00000599575 AENQ8WTP8 325 aaKnown RBP16.13■□□□□ 0.17
SHKBP1-219ENST00000599575 SKA2Q8WVK7 121 aaPredicted RBP16.13■□□□□ 0.17
SHKBP1-219ENST00000599575 RAD51AP1Q96B01 352 aa16.13■□□□□ 0.17
SHKBP1-219ENST00000599575 AHCYL2Q96HN2 611 aaKnown RBP16.13■□□□□ 0.17
SHKBP1-219ENST00000599575 GFM1Q96RP9 751 aaKnown RBP16.13■□□□□ 0.17
SHKBP1-219ENST00000599575 RAB11FIP5Q9BXF6 653 aa16.13■□□□□ 0.17
SHKBP1-219ENST00000599575 EPHA6Q9UF33 1036 aa16.13■□□□□ 0.17
SHKBP1-219ENST00000599575 CCDC189A1A4V9 331 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms