RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 ARCN1P48444 511 aaKnown RBP18.24■□□□□ 0.51
PNKP-213ENST00000599543 MSLNQ13421 630 aaPredicted RBP18.24■□□□□ 0.51
PNKP-213ENST00000599543 TMTC4Q5T4D3 741 aa18.24■□□□□ 0.51
PNKP-213ENST00000599543 DENND5AQ6IQ26 1287 aa18.24■□□□□ 0.51
PNKP-213ENST00000599543 TMEM126BQ8IUX1 230 aa18.24■□□□□ 0.51
PNKP-213ENST00000599543 CARFQ8N187 725 aa18.24■□□□□ 0.51
PNKP-213ENST00000599543 D2HGDHQ8N465 521 aa18.24■□□□□ 0.51
PNKP-213ENST00000599543 LILRA3Q8N6C8 439 aaPredicted RBP18.24■□□□□ 0.51
PNKP-213ENST00000599543 PRELID2Q8N945 189 aa18.24■□□□□ 0.51
PNKP-213ENST00000599543 PBKQ96KB5 322 aa18.24■□□□□ 0.51
PNKP-213ENST00000599543 VPS37BQ9H9H4 285 aa18.24■□□□□ 0.51
PNKP-213ENST00000599543 ARNT2Q9HBZ2 717 aa18.24■□□□□ 0.51
PNKP-213ENST00000599543 SNX12Q9UMY4 172 aa18.24■□□□□ 0.51
PNKP-213ENST00000599543 LRRK2Q5S007 2527 aa18.23■□□□□ 0.51
PNKP-213ENST00000599543 DOPEY2Q9Y3R5 2298 aa18.23■□□□□ 0.51
PNKP-213ENST00000599543 MKRN2OSH3BPM6 223 aa18.23■□□□□ 0.51
PNKP-213ENST00000599543 CCL22O00626 93 aa18.23■□□□□ 0.51
PNKP-213ENST00000599543 LDB2O43679 373 aa18.23■□□□□ 0.51
PNKP-213ENST00000599543 CPNE3O75131 537 aaKnown RBP18.23■□□□□ 0.51
PNKP-213ENST00000599543 SCRG1O75711 98 aa18.23■□□□□ 0.51
PNKP-213ENST00000599543 NTRK1P04629 796 aa18.23■□□□□ 0.51
PNKP-213ENST00000599543 FURINP09958 794 aa18.23■□□□□ 0.51
PNKP-213ENST00000599543 KPNA2P52292 529 aaKnown RBP18.23■□□□□ 0.51
PNKP-213ENST00000599543 GPR33Q49SQ1 333 aa18.23■□□□□ 0.51
PNKP-213ENST00000599543 ZRANB3Q5FWF4 1079 aa18.23■□□□□ 0.51
PNKP-213ENST00000599543 CAPRIN2Q6IMN6 1127 aaKnown RBP18.23■□□□□ 0.51
PNKP-213ENST00000599543 RASGEF1CQ8N431 466 aa18.23■□□□□ 0.51
PNKP-213ENST00000599543 ACVR1CQ8NER5 493 aa18.23■□□□□ 0.51
PNKP-213ENST00000599543 OR8K5Q8NH50 307 aa18.23■□□□□ 0.51
PNKP-213ENST00000599543 SEC14L1Q92503 715 aa18.23■□□□□ 0.51
PNKP-213ENST00000599543 DNAJC1Q96KC8 554 aaKnown RBP18.23■□□□□ 0.51
PNKP-213ENST00000599543 ACTL8Q9H568 366 aa18.23■□□□□ 0.51
PNKP-213ENST00000599543 LRRC40Q9H9A6 602 aa18.23■□□□□ 0.51
PNKP-213ENST00000599543 FANCEQ9HB96 536 aa18.23■□□□□ 0.51
PNKP-213ENST00000599543 TP53TG5Q9Y2B4 290 aa18.23■□□□□ 0.51
PNKP-213ENST00000599543 MAN2B2Q9Y2E5 1009 aa18.23■□□□□ 0.51
PNKP-213ENST00000599543 C17orf113A0A1B0GUU1 675 aa18.22■□□□□ 0.51
PNKP-213ENST00000599543 MATN2O00339 956 aa18.22■□□□□ 0.51
PNKP-213ENST00000599543 IFRD1O00458 451 aaPredicted RBP18.22■□□□□ 0.51
PNKP-213ENST00000599543 RFPL1O75677 317 aa18.22■□□□□ 0.51
PNKP-213ENST00000599543 RECKO95980 971 aa18.22■□□□□ 0.51
PNKP-213ENST00000599543 POLR2CP19387 275 aaPredicted RBP18.22■□□□□ 0.51
PNKP-213ENST00000599543 MSNP26038 577 aaKnown RBP18.22■□□□□ 0.51
PNKP-213ENST00000599543 ACRV1P26436 265 aa18.22■□□□□ 0.51
PNKP-213ENST00000599543 TERF1P54274 439 aa18.22■□□□□ 0.51
PNKP-213ENST00000599543 GPR19Q15760 415 aa18.22■□□□□ 0.51
PNKP-213ENST00000599543 CCNG2Q16589 344 aa18.22■□□□□ 0.51
PNKP-213ENST00000599543 TMEM135Q86UB9 458 aa18.22■□□□□ 0.51
PNKP-213ENST00000599543 OR4E2Q8NGC2 313 aa18.22■□□□□ 0.51
PNKP-213ENST00000599543 LCN9Q8WX39 176 aa18.22■□□□□ 0.51
PNKP-213ENST00000599543 CAPZA3Q96KX2 299 aa18.22■□□□□ 0.51
PNKP-213ENST00000599543 GPR87Q9BY21 358 aa18.22■□□□□ 0.51
PNKP-213ENST00000599543 SRMSQ9H3Y6 488 aa18.22■□□□□ 0.51
PNKP-213ENST00000599543 COG4Q9H9E3 785 aa18.22■□□□□ 0.51
PNKP-213ENST00000599543 PIH1D1Q9NWS0 290 aaKnown RBP18.22■□□□□ 0.51
PNKP-213ENST00000599543 ZDHHC3Q9NYG2 299 aa18.22■□□□□ 0.51
PNKP-213ENST00000599543 POMT2Q9UKY4 750 aa18.22■□□□□ 0.51
PNKP-213ENST00000599543 NAV2Q8IVL1 2488 aa18.22■□□□□ 0.51
PNKP-213ENST00000599543 GSAPA4D1B5 854 aa18.21■□□□□ 0.51
PNKP-213ENST00000599543 CDH3P22223 829 aa18.21■□□□□ 0.51
PNKP-213ENST00000599543 PMS2P54278 862 aa18.21■□□□□ 0.51
PNKP-213ENST00000599543 RPS15P62841 145 aaKnown RBP18.21■□□□□ 0.51
PNKP-213ENST00000599543 PARP6Q2NL67 630 aa18.21■□□□□ 0.51
PNKP-213ENST00000599543 P3H1Q32P28 736 aa18.21■□□□□ 0.51
PNKP-213ENST00000599543 KCTD11Q693B1 232 aa18.21■□□□□ 0.51
PNKP-213ENST00000599543 TTC27Q6P3X3 843 aa18.21■□□□□ 0.51
PNKP-213ENST00000599543 ZNF449Q6P9G9 518 aa18.21■□□□□ 0.51
PNKP-213ENST00000599543 FAM199XQ6PEV8 388 aaPredicted RBP18.21■□□□□ 0.51
PNKP-213ENST00000599543 TAS2R42Q7RTR8 314 aa18.21■□□□□ 0.51
PNKP-213ENST00000599543 SERPINA9Q86WD7 417 aa18.21■□□□□ 0.51
PNKP-213ENST00000599543 KLHDC8BQ8IXV7 354 aa18.21■□□□□ 0.51
PNKP-213ENST00000599543 MAIP1Q8WWC4 291 aa18.21■□□□□ 0.51
PNKP-213ENST00000599543 ZNF501Q96CX3 271 aaPredicted RBP18.21■□□□□ 0.51
PNKP-213ENST00000599543 FERD3LQ96RJ6 166 aa18.21■□□□□ 0.51
PNKP-213ENST00000599543 NAPGQ99747 312 aaPredicted RBP18.21■□□□□ 0.51
PNKP-213ENST00000599543 FRMD8P1Q9BZ68 369 aaPredicted RBP18.21■□□□□ 0.51
PNKP-213ENST00000599543 KCND1Q9NSA2 647 aa18.21■□□□□ 0.51
PNKP-213ENST00000599543 BTRCQ9Y297 605 aa18.21■□□□□ 0.51
PNKP-213ENST00000599543 RP1L1Q8IWN7 2480 aaPredicted RBP18.21■□□□□ 0.5
PNKP-213ENST00000599543 SEC16AO15027 2179 aa18.2■□□□□ 0.5
PNKP-213ENST00000599543 IGLV3-16A0A075B6K0 115 aa18.2■□□□□ 0.5
PNKP-213ENST00000599543 H7C0S8 307 aa18.2■□□□□ 0.5
PNKP-213ENST00000599543 PGRMC1O00264 195 aaKnown RBP18.2■□□□□ 0.5
PNKP-213ENST00000599543 PTPN4P29074 926 aa18.2■□□□□ 0.5
PNKP-213ENST00000599543 CDKN1CP49918 316 aaPredicted RBP18.2■□□□□ 0.5
PNKP-213ENST00000599543 KLRB1Q12918 225 aa18.2■□□□□ 0.5
PNKP-213ENST00000599543 POU6F1Q14863 301 aa18.2■□□□□ 0.5
PNKP-213ENST00000599543 TRIP13Q15645 432 aaPredicted RBP18.2■□□□□ 0.5
PNKP-213ENST00000599543 TCTN3Q6NUS6 607 aa18.2■□□□□ 0.5
PNKP-213ENST00000599543 FBXO38Q6PIJ6 1188 aa18.2■□□□□ 0.5
PNKP-213ENST00000599543 MICALCLQ6ZW33 695 aa18.2■□□□□ 0.5
PNKP-213ENST00000599543 GSTA5Q7RTV2 222 aa18.2■□□□□ 0.5
PNKP-213ENST00000599543 MR1Q95460 341 aa18.2■□□□□ 0.5
PNKP-213ENST00000599543 PPM1MQ96MI6 270 aa18.2■□□□□ 0.5
PNKP-213ENST00000599543 OR52A5Q9H2C5 316 aa18.2■□□□□ 0.5
PNKP-213ENST00000599543 AKIRIN1Q9H9L7 192 aaPredicted RBP18.2■□□□□ 0.5
PNKP-213ENST00000599543 C1GALT1Q9NS00 363 aa18.2■□□□□ 0.5
PNKP-213ENST00000599543 NLE1Q9NVX2 485 aaPredicted RBP18.2■□□□□ 0.5
PNKP-213ENST00000599543 TRBV5-4A0A0C4DH59 114 aa18.19■□□□□ 0.5
PNKP-213ENST00000599543 SLC9B1P1A6NJY1 282 aa18.19■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms