RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 MGAT5Q09328 741 aa13.84□□□□□ -0.19
SHKBP1-217ENST00000598558 C16orf72Q14CZ0 275 aa13.84□□□□□ -0.19
SHKBP1-217ENST00000598558 ACSBG2Q5FVE4 666 aa13.84□□□□□ -0.19
SHKBP1-217ENST00000598558 TMEM71Q6P5X7 295 aa13.84□□□□□ -0.19
SHKBP1-217ENST00000598558 SIDT2Q8NBJ9 832 aaKnown RBP13.84□□□□□ -0.19
SHKBP1-217ENST00000598558 RCBTB1Q8NDN9 531 aa13.84□□□□□ -0.19
SHKBP1-217ENST00000598558 OR10G6Q8NH81 332 aa13.84□□□□□ -0.19
SHKBP1-217ENST00000598558 GSDMBQ8TAX9 411 aa13.84□□□□□ -0.19
SHKBP1-217ENST00000598558 CALML6Q8TD86 181 aa13.84□□□□□ -0.19
SHKBP1-217ENST00000598558 ASZ1Q8WWH4 475 aa13.84□□□□□ -0.19
SHKBP1-217ENST00000598558 IFT81Q8WYA0 676 aa13.84□□□□□ -0.19
SHKBP1-217ENST00000598558 TMEM159Q96B96 161 aa13.84□□□□□ -0.19
SHKBP1-217ENST00000598558 CCDC74BQ96LY2 380 aa13.84□□□□□ -0.19
SHKBP1-217ENST00000598558 MCMBPQ9BTE3 642 aa13.84□□□□□ -0.19
SHKBP1-217ENST00000598558 STN1Q9H668 368 aaKnown RBP13.84□□□□□ -0.19
SHKBP1-217ENST00000598558 XKR8Q9H6D3 395 aa13.84□□□□□ -0.19
SHKBP1-217ENST00000598558 KIR3DX1Q9H7L2 352 aa13.84□□□□□ -0.19
SHKBP1-217ENST00000598558 LRRC4CQ9HCJ2 640 aa13.84□□□□□ -0.19
SHKBP1-217ENST00000598558 PPANQ9NQ55 473 aaKnown RBP13.84□□□□□ -0.19
SHKBP1-217ENST00000598558 CIDEBQ9UHD4 219 aa13.84□□□□□ -0.19
SHKBP1-217ENST00000598558 TSR3Q9UJK0 312 aaKnown RBP13.84□□□□□ -0.19
SHKBP1-217ENST00000598558 PTPRBP23467 1997 aa13.83□□□□□ -0.19
SHKBP1-217ENST00000598558 KRT87PA6NCN2 255 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 IFRD1O00458 451 aaPredicted RBP13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 KIF1CO43896 1103 aaKnown RBP13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 MPOP05164 745 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 RHOXF2BP0C7M4 288 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 HGFP14210 728 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 CCKBRP32239 447 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 CDKN2DP55273 166 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 GRB7Q14451 532 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 MAP9Q49MG5 647 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 CCSMST1Q4G0I0 132 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 SYTL3Q4VX76 610 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 PLEKHS1Q5SXH7 462 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 WDR74Q6RFH5 385 aaPredicted RBP13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 CYHR1Q6ZMK1 362 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 C3orf62Q6ZUJ4 267 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 PALM2Q8IXS6 379 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 RBM12BQ8IXT5 1001 aaKnown RBP13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 AVL9Q8NBF6 648 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 OR4E2Q8NGC2 313 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 OR4D9Q8NGE8 314 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 OR52E1Q8NGJ3 308 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 MDM1Q8TC05 714 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 AHCYL2Q96HN2 611 aaKnown RBP13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 PPM1MQ96MI6 270 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 PANX3Q96QZ0 392 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 GPR21Q99679 349 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 RHOXF2Q9BQY4 288 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 HGH1Q9BTY7 390 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 PHACTR1Q9C0D0 580 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 FAM114A2Q9NRY5 505 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 PLAGL1Q9UM63 463 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 ASF1AQ9Y294 204 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 DHRS7Q9Y394 339 aa13.83□□□□□ -0.2
SHKBP1-217ENST00000598558 TCRBV9S1A1TA0A576 114 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 OR6C74A6NCV1 312 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 A8MU76 341 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 H3BMM5 538 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 BTN3A3O00478 584 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 PFDN6O15212 129 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 DUX1O43812 170 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 C9P02748 559 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 APOA4P06727 396 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 THRAP10827 490 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 AMD1P17707 334 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 ETV5P41161 510 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 PLOD1Q02809 727 aaPredicted RBP13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 CYP4F3Q08477 520 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 CUL1Q13616 776 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 RTP5Q14D33 572 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 KYNUQ16719 465 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 SNAP47Q5SQN1 464 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 PHF19Q5T6S3 580 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 KIAA0408Q6ZU52 694 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 OTOAQ7RTW8 1153 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 ARHGAP22Q7Z5H3 698 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 ZBTB2Q8N680 514 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 CFAP61Q8NHU2 1237 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 CD200R1Q8TD46 325 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 ZFPM2Q8WW38 1151 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 KCNJ9Q92806 393 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 TMEM74Q96NL1 305 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 OLFM1Q99784 485 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 MENTQ9BUN1 341 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 TSSK1BQ9BXA7 367 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 MVB12BQ9H7P6 319 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 KLHL3Q9UH77 587 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 SATB2Q9UPW6 733 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 ICKQ9UPZ9 632 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 VPS9D1Q9Y2B5 631 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 COLEC10Q9Y6Z7 277 aa13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 ZFC3H1O60293 1989 aaKnown RBP13.82□□□□□ -0.2
SHKBP1-217ENST00000598558 OR5K3A6NET4 321 aa13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 FAM159BA6NKW6 160 aa13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 F8W8V4 182 aa13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 TAF4O00268 1085 aa13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 CAPN5O15484 640 aaPredicted RBP13.81□□□□□ -0.2
SHKBP1-217ENST00000598558 FAM155BO75949 473 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms