RNA–Protein interactions for RNA: ENST00000584437.5

RNF43-208, Transcript of ring finger protein 43, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RNF43, Length 5,575 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43-208ENST00000584437 USP41Q3LFD5 358 aa12.86□□□□□ -0.35
RNF43-208ENST00000584437 C6orf89Q6UWU4 347 aa12.86□□□□□ -0.35
RNF43-208ENST00000584437 UBE2J2Q8N2K1 259 aa12.86□□□□□ -0.35
RNF43-208ENST00000584437 CCDC107Q8WV48 283 aa12.86□□□□□ -0.35
RNF43-208ENST00000584437 LRRC58Q96CX6 371 aa12.86□□□□□ -0.35
RNF43-208ENST00000584437 C12orf66Q96MD2 445 aa12.86□□□□□ -0.35
RNF43-208ENST00000584437 ERVK-6Q9BXR3 956 aa12.86□□□□□ -0.35
RNF43-208ENST00000584437 SIX2Q9NPC8 291 aa12.86□□□□□ -0.35
RNF43-208ENST00000584437 CNTN3Q9P232 1028 aa12.86□□□□□ -0.35
RNF43-208ENST00000584437 NID2Q14112 1375 aa12.86□□□□□ -0.35
RNF43-208ENST00000584437 CD72P21854 359 aa12.86□□□□□ -0.35
RNF43-208ENST00000584437 DNAJB1P25685 340 aa12.86□□□□□ -0.35
RNF43-208ENST00000584437 GDF10P55107 478 aa12.86□□□□□ -0.35
RNF43-208ENST00000584437 RPL19P84098 196 aaKnown RBP12.86□□□□□ -0.35
RNF43-208ENST00000584437 PRR5P85299 388 aa12.86□□□□□ -0.35
RNF43-208ENST00000584437 SNX20Q7Z614 316 aa12.86□□□□□ -0.35
RNF43-208ENST00000584437 CPNE9Q8IYJ1 553 aa12.86□□□□□ -0.35
RNF43-208ENST00000584437 CHST4Q8NCG5 386 aa12.86□□□□□ -0.35
RNF43-208ENST00000584437 BRSK1Q8TDC3 778 aa12.86□□□□□ -0.35
RNF43-208ENST00000584437 TMEM209Q96SK2 561 aa12.86□□□□□ -0.35
RNF43-208ENST00000584437 EQTNQ9NQ60 294 aa12.86□□□□□ -0.35
RNF43-208ENST00000584437 PCDHGA11Q9Y5H2 935 aa12.86□□□□□ -0.35
RNF43-208ENST00000584437 A0A1W2PQH9 124 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 PRORSD1PA6NEY8 169 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 TRIM3O75382 744 aaPredicted RBP12.85□□□□□ -0.35
RNF43-208ENST00000584437 MAB21L1Q13394 359 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 HEPACAMQ14CZ8 416 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 TOMM20Q15388 145 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 CACUL1Q86Y37 369 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 OR4C6Q8NH72 309 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 SPATA22Q8NHS9 363 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 PCDH19Q8TAB3 1148 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 TVP23BQ9NYZ1 205 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 BCL9O00512 1426 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 SPATA31D1Q6ZQQ2 1576 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 MANSC4A6NHS7 340 aaPredicted RBP12.85□□□□□ -0.35
RNF43-208ENST00000584437 ANXA2P2A6NMY6 339 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 KRT33AO76009 404 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 ANXA2P07355 339 aaKnown RBP12.85□□□□□ -0.35
RNF43-208ENST00000584437 ZNF806P0C7X5 589 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 CSTF2P33240 577 aaKnown RBP eCLIP12.85□□□□□ -0.35
RNF43-208ENST00000584437 RHDQ02161 417 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 LDB1Q86U70 411 aaPredicted RBP12.85□□□□□ -0.35
RNF43-208ENST00000584437 ANKRD46Q86W74 232 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 OR10G2Q8NGC3 310 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 OR8D1Q8WZ84 308 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 DNASE1L2Q92874 299 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 FAM84AQ96KN4 292 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 ZFP3Q96NJ6 502 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 MAF1Q9H063 256 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 POLR2J3Q9H1A7 115 aaKnown RBP12.85□□□□□ -0.35
RNF43-208ENST00000584437 IRF2BPLQ9H1B7 796 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 ITPKBP27987 946 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 TUSC3Q13454 348 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 LINGO2Q7L985 606 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 IQCF2Q8IXL9 164 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 CEP76Q8TAP6 659 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 FEM1CQ96JP0 617 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 CAMK1GQ96NX5 476 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 MAGEH1Q9H213 219 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 ZIM2Q9NZV7 527 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 TMEM59LQ9UK28 342 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 NUP50Q9UKX7 468 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 COQ4Q9Y3A0 265 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 PCDHGB7Q9Y5F8 929 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 CCRL2O00421 344 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 MSI1O43347 362 aaKnown RBP12.85□□□□□ -0.35
RNF43-208ENST00000584437 IL1BP01584 269 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 CD2P06729 351 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 POU2F1P14859 743 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 PPP3R1P63098 170 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 SYCE2Q6PIF2 218 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 POF1BQ8WVV4 589 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 TCF7L1Q9HCS4 588 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 ACTR3BQ9P1U1 418 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 FZD10Q9ULW2 581 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 POFUT2Q9Y2G5 429 aa12.85□□□□□ -0.35
RNF43-208ENST00000584437 SPIN1Q9Y657 262 aaPredicted RBP12.85□□□□□ -0.35
RNF43-208ENST00000584437 TCAF2A6NFQ2 919 aa12.84□□□□□ -0.35
RNF43-208ENST00000584437 GRM6O15303 877 aa12.84□□□□□ -0.35
RNF43-208ENST00000584437 CLCN4P51793 760 aa12.84□□□□□ -0.35
RNF43-208ENST00000584437 BEX3Q00994 111 aa12.84□□□□□ -0.35
RNF43-208ENST00000584437 MADCAM1Q13477 382 aa12.84□□□□□ -0.35
RNF43-208ENST00000584437 ZCCHC12Q6PEW1 402 aa12.84□□□□□ -0.35
RNF43-208ENST00000584437 ERMP1Q7Z2K6 904 aa12.84□□□□□ -0.35
RNF43-208ENST00000584437 SLC22A16Q86VW1 577 aa12.84□□□□□ -0.35
RNF43-208ENST00000584437 KLHL36Q8N4N3 616 aa12.84□□□□□ -0.35
RNF43-208ENST00000584437 DCBLD1Q8N8Z6 715 aa12.84□□□□□ -0.35
RNF43-208ENST00000584437 C1orf127Q8N9H9 656 aa12.84□□□□□ -0.35
RNF43-208ENST00000584437 EXOSC8Q96B26 276 aaKnown RBP12.84□□□□□ -0.35
RNF43-208ENST00000584437 C12orf43Q96C57 262 aaKnown RBP12.84□□□□□ -0.35
RNF43-208ENST00000584437 HSPBAP1Q96EW2 488 aa12.84□□□□□ -0.35
RNF43-208ENST00000584437 HNRNPABQ99729 332 aaKnown RBP12.84□□□□□ -0.35
RNF43-208ENST00000584437 FAM105AQ9NUU6 356 aa12.84□□□□□ -0.35
RNF43-208ENST00000584437 THUMPD1Q9NXG2 353 aaKnown RBP12.84□□□□□ -0.35
RNF43-208ENST00000584437 PPIEQ9UNP9 301 aaKnown RBP12.84□□□□□ -0.35
RNF43-208ENST00000584437 RLN2P04090 185 aa12.84□□□□□ -0.35
RNF43-208ENST00000584437 MTHFD1P11586 935 aaKnown RBP12.84□□□□□ -0.35
RNF43-208ENST00000584437 YAP1P46937 504 aaKnown RBP12.84□□□□□ -0.35
RNF43-208ENST00000584437 AZIN2Q96A70 460 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms