RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 PCDH7O60245 1069 aa4.2□□□□□ -1.74
SMCHD1-204ENST00000581226 MED24O75448 989 aa4.2□□□□□ -1.74
SMCHD1-204ENST00000581226 ERAL1O75616 437 aaKnown RBP4.2□□□□□ -1.74
SMCHD1-204ENST00000581226 CDH11P55287 796 aa4.2□□□□□ -1.74
SMCHD1-204ENST00000581226 KRTAP10-6P60371 365 aaPredicted RBP4.2□□□□□ -1.74
SMCHD1-204ENST00000581226 IFI35P80217 286 aaPredicted RBP4.2□□□□□ -1.74
SMCHD1-204ENST00000581226 MDH1BQ5I0G3 518 aa4.2□□□□□ -1.74
SMCHD1-204ENST00000581226 TMEM211Q6ICI0 200 aa4.2□□□□□ -1.74
SMCHD1-204ENST00000581226 ZNF449Q6P9G9 518 aa4.2□□□□□ -1.74
SMCHD1-204ENST00000581226 TMED8Q6PL24 325 aaPredicted RBP4.2□□□□□ -1.74
SMCHD1-204ENST00000581226 CORO6Q6QEF8 472 aa4.2□□□□□ -1.74
SMCHD1-204ENST00000581226 DNAJC22Q8N4W6 341 aa4.2□□□□□ -1.74
SMCHD1-204ENST00000581226 PPFIBP2Q8ND30 876 aa4.2□□□□□ -1.74
SMCHD1-204ENST00000581226 MOSPD2Q8NHP6 518 aa4.2□□□□□ -1.74
SMCHD1-204ENST00000581226 ZNF501Q96CX3 271 aaPredicted RBP4.2□□□□□ -1.74
SMCHD1-204ENST00000581226 SLC47A1Q96FL8 570 aa4.2□□□□□ -1.74
SMCHD1-204ENST00000581226 SGK494Q96LW2 274 aa4.2□□□□□ -1.74
SMCHD1-204ENST00000581226 MYADMQ96S97 322 aa4.2□□□□□ -1.74
SMCHD1-204ENST00000581226 SLC35C2Q9NQQ7 365 aa4.2□□□□□ -1.74
SMCHD1-204ENST00000581226 ADPRHL2Q9NX46 363 aa4.2□□□□□ -1.74
SMCHD1-204ENST00000581226 COQ3Q9NZJ6 369 aa4.2□□□□□ -1.74
SMCHD1-204ENST00000581226 GAB2Q9UQC2 676 aa4.2□□□□□ -1.74
SMCHD1-204ENST00000581226 MAGED1Q9Y5V3 778 aaPredicted RBP4.2□□□□□ -1.74
SMCHD1-204ENST00000581226 ANKUB1A6NFN9 424 aa4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 BLOC1S5-TXNDC5H3BN57 136 aa4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 SH2B2O14492 632 aaPredicted RBP4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 ADAM20O43506 726 aa4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 CSPG5O95196 566 aa4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 LDHCP07864 332 aa4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 CFC1BP0CG36 223 aa4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 CFC1P0CG37 223 aa4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 DNASE1P24855 282 aa4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 GLIPR1P48060 266 aa4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 LIG4P49917 911 aa4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 CDH13P55290 713 aa4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 TPD52P55327 224 aaPredicted RBP4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 TUBB4BP68371 445 aa4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 GARNL3Q5VVW2 1013 aa4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 COMMD2Q86X83 199 aa4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 AVL9Q8NBF6 648 aa4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 OR5M8Q8NGP6 311 aa4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 EXD1Q8NHP7 514 aa4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 SPATA3Q8NHX4 192 aa4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 RNF128Q8TEB7 428 aa4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 MS4A10Q96PG2 267 aa4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 F2RL3Q96RI0 385 aa4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 RTP3Q9BQQ7 232 aa4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 LMF2Q9BU23 707 aaKnown RBP4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 APOL6Q9BWW8 343 aa4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 TMX4Q9H1E5 349 aaPredicted RBP4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 TBC1D17Q9HA65 648 aa4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 SLC52A3Q9NQ40 469 aa4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 MDFICQ9P1T7 246 aa4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 ZHX1Q9UKY1 873 aaPredicted RBP4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 GRIP1Q9Y3R0 1128 aa4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 PASKQ96RG2 1323 aa4.19□□□□□ -1.74
SMCHD1-204ENST00000581226 hCG_1809904A0A1W2PP81 198 aa4.18□□□□□ -1.74
SMCHD1-204ENST00000581226 A0A1W2PPE2 198 aa4.18□□□□□ -1.74
SMCHD1-204ENST00000581226 A0A1W2PR64 198 aa4.18□□□□□ -1.74
SMCHD1-204ENST00000581226 HYKKA2RU49 373 aa4.18□□□□□ -1.74
SMCHD1-204ENST00000581226 E9PI62 339 aa4.18□□□□□ -1.74
SMCHD1-204ENST00000581226 NR2F1P10589 423 aa4.18□□□□□ -1.74
SMCHD1-204ENST00000581226 LIFP15018 202 aa4.18□□□□□ -1.74
SMCHD1-204ENST00000581226 CHRNB4P30926 498 aa4.18□□□□□ -1.74
SMCHD1-204ENST00000581226 BECN1Q14457 450 aa4.18□□□□□ -1.74
SMCHD1-204ENST00000581226 RBM39Q14498 530 aaKnown RBP4.18□□□□□ -1.74
SMCHD1-204ENST00000581226 SNAPC1Q16533 368 aa4.18□□□□□ -1.74
SMCHD1-204ENST00000581226 CBWD6Q4V339 395 aa4.18□□□□□ -1.74
SMCHD1-204ENST00000581226 CBWD3Q5JTY5 395 aa4.18□□□□□ -1.74
SMCHD1-204ENST00000581226 CLEC4GQ6UXB4 293 aa4.18□□□□□ -1.74
SMCHD1-204ENST00000581226 LINGO4Q6UY18 593 aa4.18□□□□□ -1.74
SMCHD1-204ENST00000581226 ZNF554Q86TJ5 538 aa4.18□□□□□ -1.74
SMCHD1-204ENST00000581226 TMEM143Q96AN5 459 aa4.18□□□□□ -1.74
SMCHD1-204ENST00000581226 SPACA9Q96E40 222 aaPredicted RBP4.18□□□□□ -1.74
SMCHD1-204ENST00000581226 SENP5Q96HI0 755 aaPredicted RBP4.18□□□□□ -1.74
SMCHD1-204ENST00000581226 OLFM1Q99784 485 aa4.18□□□□□ -1.74
SMCHD1-204ENST00000581226 VN1R1Q9GZP7 353 aa4.18□□□□□ -1.74
SMCHD1-204ENST00000581226 OPA3Q9H6K4 179 aa4.18□□□□□ -1.74
SMCHD1-204ENST00000581226 GDE1Q9NZC3 331 aa4.18□□□□□ -1.74
SMCHD1-204ENST00000581226 CRNNQ9UBG3 495 aaPredicted RBP4.18□□□□□ -1.74
SMCHD1-204ENST00000581226 MORF4L1Q9UBU8 362 aa4.18□□□□□ -1.74
SMCHD1-204ENST00000581226 RABGAP1Q9Y3P9 1069 aa4.18□□□□□ -1.74
SMCHD1-204ENST00000581226 C2CD2Q9Y426 696 aa4.18□□□□□ -1.74
SMCHD1-204ENST00000581226 SLC22A2O15244 555 aa4.17□□□□□ -1.74
SMCHD1-204ENST00000581226 ABCB1P08183 1280 aaPredicted RBP4.17□□□□□ -1.74
SMCHD1-204ENST00000581226 ERVK-10P10266 1014 aa4.17□□□□□ -1.74
SMCHD1-204ENST00000581226 AKR1B1P15121 316 aa4.17□□□□□ -1.74
SMCHD1-204ENST00000581226 HOXC8P31273 242 aa4.17□□□□□ -1.74
SMCHD1-204ENST00000581226 SLC9A3P48764 834 aa4.17□□□□□ -1.74
SMCHD1-204ENST00000581226 CRIP2P52943 208 aaPredicted RBP4.17□□□□□ -1.74
SMCHD1-204ENST00000581226 CX3CL1P78423 397 aa4.17□□□□□ -1.74
SMCHD1-204ENST00000581226 LGALS3BPQ08380 585 aa4.17□□□□□ -1.74
SMCHD1-204ENST00000581226 DMPKQ09013 629 aa4.17□□□□□ -1.74
SMCHD1-204ENST00000581226 TOMM20Q15388 145 aa4.17□□□□□ -1.74
SMCHD1-204ENST00000581226 ZNF876PQ49A33 203 aa4.17□□□□□ -1.74
SMCHD1-204ENST00000581226 RNASEH2BQ5TBB1 312 aaKnown RBP4.17□□□□□ -1.74
SMCHD1-204ENST00000581226 MFSD4BQ5TF39 518 aa4.17□□□□□ -1.74
SMCHD1-204ENST00000581226 GPR139Q6DWJ6 353 aa4.17□□□□□ -1.74
SMCHD1-204ENST00000581226 TMPRSS11FQ6ZWK6 438 aa4.17□□□□□ -1.74
SMCHD1-204ENST00000581226 ISCA2Q86U28 154 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms