RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 MID1O15344 667 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 PLRG1O43660 514 aaKnown RBP7.81□□□□□ -1.16
VPS39-213ENST00000570062 UGDHO60701 494 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 LYPLA1O75608 230 aaPredicted RBP7.81□□□□□ -1.16
VPS39-213ENST00000570062 STK16O75716 305 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 RNASEH2AO75792 299 aaKnown RBP7.81□□□□□ -1.16
VPS39-213ENST00000570062 UBOX5O94941 541 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 WDR47O94967 919 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 KLF8O95600 359 aaPredicted RBP7.81□□□□□ -1.16
VPS39-213ENST00000570062 EBLN1P0CF75 366 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 EPB42P16452 691 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 PTPN4P29074 926 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 SERPINB3P29508 390 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 EEF1DP29692 281 aaKnown RBP7.81□□□□□ -1.16
VPS39-213ENST00000570062 DRD3P35462 400 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 TRIM23P36406 574 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 KCNC1P48547 511 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 ATP4BP51164 291 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 COPAP53621 1224 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 PNLIPRP1P54315 467 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 B4GALNT1Q00973 533 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 PON2Q15165 354 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 DNAL1Q4LDG9 190 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 AGBL4Q5VU57 503 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 TMEM220Q6QAJ8 160 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 SBSNQ6UWP8 590 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 UNC5DQ6UXZ4 953 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 UBE2R2Q712K3 238 aaPredicted RBP7.81□□□□□ -1.16
VPS39-213ENST00000570062 SPATA19Q7Z5L4 167 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 HORMAD1Q86X24 394 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 C10orf67Q8IYJ2 551 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 LSMEM2Q8N112 164 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 RAB42Q8N4Z0 105 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 CPSF7Q8N684 471 aaKnown RBP7.81□□□□□ -1.16
VPS39-213ENST00000570062 IL17RCQ8NAC3 791 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 OR2L2Q8NH16 312 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 GIMAP7Q8NHV1 300 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 HM13Q8TCT9 377 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 MYLIPQ8WY64 445 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 ATP6V1E2Q96A05 226 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 COX14Q96I36 57 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 RMDN2Q96LZ7 410 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 TEX101Q9BY14 249 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 CD244Q9BZW8 370 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 SLC32A1Q9H598 525 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 MEAF6Q9HAF1 191 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 CYP4F12Q9HCS2 524 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 MID1IP1Q9NPA3 183 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 ABCF3Q9NUQ8 709 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 ARL15Q9NXU5 204 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 WWOXQ9NZC7 414 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 OPTCQ9UBM4 332 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 MARCOQ9UEW3 520 aaPredicted RBP7.81□□□□□ -1.16
VPS39-213ENST00000570062 TAGLN3Q9UI15 199 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 ZDHHC2Q9UIJ5 367 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 CDH22Q9UJ99 828 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 ACSL5Q9ULC5 683 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 MMP17Q9ULZ9 603 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 PRSS21Q9Y6M0 314 aa7.81□□□□□ -1.16
VPS39-213ENST00000570062 A0A1W2PP55 124 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 SLC5A10A0PJK1 596 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 NEMP2A6NFY4 417 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 FADS2P1A8MWK0 482 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 CACNB4O00305 520 aaPredicted RBP7.8□□□□□ -1.16
VPS39-213ENST00000570062 SLC28A1O00337 649 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 E2F3O00716 465 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 CHUKO15111 745 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 GRID2O43424 1007 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 RNGTTO60942 597 aaKnown RBP7.8□□□□□ -1.16
VPS39-213ENST00000570062 ZNF217O75362 1048 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 PSIP1O75475 530 aaKnown RBP7.8□□□□□ -1.16
VPS39-213ENST00000570062 MATN4O95460 622 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 EGFP01133 1207 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 CHRNGP07510 517 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 F7P08709 466 aaPredicted RBP7.8□□□□□ -1.16
VPS39-213ENST00000570062 NCF2P19878 526 aaPredicted RBP7.8□□□□□ -1.16
VPS39-213ENST00000570062 CCND1P24385 295 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 HTR1BP28222 390 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 MAGEA9P43362 315 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 SEC13P55735 322 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 STX1BP61266 288 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 RELBQ01201 579 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 MESP2Q0VG99 397 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 STX5Q13190 355 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 MAD2L1Q13257 205 aaPredicted RBP7.8□□□□□ -1.16
VPS39-213ENST00000570062 HERC3Q15034 1050 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 RBBP7Q16576 425 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 GSTA3Q16772 222 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 PPP1R3AQ16821 1122 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 POM121L1PQ3SYA9 428 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 C2orf27AQ580R0 203 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 RNFT1Q5M7Z0 435 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 KANK2Q63ZY3 851 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 ZNF385CQ66K41 422 aaPredicted RBP7.8□□□□□ -1.16
VPS39-213ENST00000570062 GPRIN3Q6ZVF9 776 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 ADGRG6Q86SQ4 1221 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 LRRTM4Q86VH4 590 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 AMZ2Q86W34 360 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 KLHDC8AQ8IYD2 350 aa7.8□□□□□ -1.16
VPS39-213ENST00000570062 SLC22A15Q8IZD6 547 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms