RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 FCRL4Q96PJ5 515 aa20.17■□□□□ 0.82
CLN3-219ENST00000565778 TLR10Q9BXR5 811 aa20.17■□□□□ 0.82
CLN3-219ENST00000565778 MVB12BQ9H7P6 319 aa20.17■□□□□ 0.82
CLN3-219ENST00000565778 RIMKLBQ9ULI2 386 aa20.17■□□□□ 0.82
CLN3-219ENST00000565778 ZKSCAN5Q9Y2L8 839 aa20.17■□□□□ 0.82
CLN3-219ENST00000565778 GSAPA4D1B5 854 aa20.16■□□□□ 0.82
CLN3-219ENST00000565778 LIN7AO14910 233 aaPredicted RBP20.16■□□□□ 0.82
CLN3-219ENST00000565778 KATNA1O75449 491 aa20.16■□□□□ 0.82
CLN3-219ENST00000565778 MT-ND3P03897 115 aa20.16■□□□□ 0.82
CLN3-219ENST00000565778 PLA2G2AP14555 144 aa20.16■□□□□ 0.82
CLN3-219ENST00000565778 TCN2P20062 427 aa20.16■□□□□ 0.82
CLN3-219ENST00000565778 CDH3P22223 829 aa20.16■□□□□ 0.82
CLN3-219ENST00000565778 CXCR5P32302 372 aa20.16■□□□□ 0.82
CLN3-219ENST00000565778 PPARGP37231 505 aaPredicted RBP20.16■□□□□ 0.82
CLN3-219ENST00000565778 KCNJ1P48048 391 aa20.16■□□□□ 0.82
CLN3-219ENST00000565778 CCZ1BP86790 482 aa20.16■□□□□ 0.82
CLN3-219ENST00000565778 CCZ1P86791 482 aaPredicted RBP20.16■□□□□ 0.82
CLN3-219ENST00000565778 FASTKD1Q53R41 847 aaKnown RBP20.16■□□□□ 0.82
CLN3-219ENST00000565778 PWWP2BQ6NUJ5 590 aa20.16■□□□□ 0.82
CLN3-219ENST00000565778 AFTPHQ6ULP2 937 aa20.16■□□□□ 0.82
CLN3-219ENST00000565778 PACS1Q6VY07 963 aa20.16■□□□□ 0.82
CLN3-219ENST00000565778 D2HGDHQ8N465 521 aa20.16■□□□□ 0.82
CLN3-219ENST00000565778 PPHLN1Q8NEY8 458 aaKnown RBP20.16■□□□□ 0.82
CLN3-219ENST00000565778 STARD8Q92502 1023 aa20.16■□□□□ 0.82
CLN3-219ENST00000565778 PPM1MQ96MI6 270 aa20.16■□□□□ 0.82
CLN3-219ENST00000565778 TFB2MQ9H5Q4 396 aaKnown RBP20.16■□□□□ 0.82
CLN3-219ENST00000565778 SOHLH2Q9NX45 425 aa20.16■□□□□ 0.82
CLN3-219ENST00000565778 ANAPC5Q9UJX4 755 aa20.16■□□□□ 0.82
CLN3-219ENST00000565778 CROTQ9UKG9 612 aa20.16■□□□□ 0.82
CLN3-219ENST00000565778 PPP2R2CQ9Y2T4 447 aa20.16■□□□□ 0.82
CLN3-219ENST00000565778 TCAF1Q9Y4C2 921 aa20.16■□□□□ 0.82
CLN3-219ENST00000565778 PCDHB3Q9Y5E6 796 aa20.16■□□□□ 0.82
CLN3-219ENST00000565778 SLC9B1P1A6NJY1 282 aa20.15■□□□□ 0.82
CLN3-219ENST00000565778 F8W8V4 182 aa20.15■□□□□ 0.82
CLN3-219ENST00000565778 MATN2O00339 956 aa20.15■□□□□ 0.82
CLN3-219ENST00000565778 OR1I1O60431 355 aa20.15■□□□□ 0.82
CLN3-219ENST00000565778 TIAF1O95411 115 aa20.15■□□□□ 0.82
CLN3-219ENST00000565778 NTRK1P04629 796 aa20.15■□□□□ 0.82
CLN3-219ENST00000565778 F8A1P23610 371 aa20.15■□□□□ 0.82
CLN3-219ENST00000565778 CCR10P46092 362 aa20.15■□□□□ 0.82
CLN3-219ENST00000565778 SESN2P58004 480 aaPredicted RBP20.15■□□□□ 0.82
CLN3-219ENST00000565778 BASP1P80723 227 aaKnown RBP20.15■□□□□ 0.82
CLN3-219ENST00000565778 PCID2Q5JVF3 399 aa20.15■□□□□ 0.82
CLN3-219ENST00000565778 NAPRTQ6XQN6 538 aa20.15■□□□□ 0.82
CLN3-219ENST00000565778 AMIGO1Q86WK6 493 aa20.15■□□□□ 0.82
CLN3-219ENST00000565778 CARFQ8N187 725 aa20.15■□□□□ 0.82
CLN3-219ENST00000565778 OR52E1Q8NGJ3 308 aa20.15■□□□□ 0.82
CLN3-219ENST00000565778 FAM117AQ9C073 453 aa20.15■□□□□ 0.82
CLN3-219ENST00000565778 XKR8Q9H6D3 395 aa20.15■□□□□ 0.82
CLN3-219ENST00000565778 CHRAC1Q9NRG0 131 aa20.15■□□□□ 0.82
CLN3-219ENST00000565778 C1GALT1Q9NS00 363 aa20.15■□□□□ 0.82
CLN3-219ENST00000565778 KCND1Q9NSA2 647 aa20.15■□□□□ 0.82
CLN3-219ENST00000565778 HOMER3Q9NSC5 361 aa20.15■□□□□ 0.82
CLN3-219ENST00000565778 MRPS18BQ9Y676 258 aaKnown RBP20.15■□□□□ 0.82
CLN3-219ENST00000565778 BAHCC1Q9P281 2608 aa20.14■□□□□ 0.82
CLN3-219ENST00000565778 GOLGA6L3A6NEY3 463 aa20.14■□□□□ 0.81
CLN3-219ENST00000565778 BTN3A3O00478 584 aa20.14■□□□□ 0.81
CLN3-219ENST00000565778 MAP3K7O43318 606 aa20.14■□□□□ 0.81
CLN3-219ENST00000565778 PRDX3P30048 256 aaKnown RBP20.14■□□□□ 0.81
CLN3-219ENST00000565778 TUBB4BP68371 445 aa20.14■□□□□ 0.81
CLN3-219ENST00000565778 CDC20Q12834 499 aa20.14■□□□□ 0.81
CLN3-219ENST00000565778 TUBB2AQ13885 445 aa20.14■□□□□ 0.81
CLN3-219ENST00000565778 BOP1Q14137 746 aaKnown RBP20.14■□□□□ 0.81
CLN3-219ENST00000565778 GPR19Q15760 415 aa20.14■□□□□ 0.81
CLN3-219ENST00000565778 DEFB109BQ30KR1 87 aa20.14■□□□□ 0.81
CLN3-219ENST00000565778 SYTL3Q4VX76 610 aa20.14■□□□□ 0.81
CLN3-219ENST00000565778 NRTNQ99748 197 aa20.14■□□□□ 0.81
CLN3-219ENST00000565778 HGH1Q9BTY7 390 aa20.14■□□□□ 0.81
CLN3-219ENST00000565778 TUBB2BQ9BVA1 445 aa20.14■□□□□ 0.81
CLN3-219ENST00000565778 GEMIN8Q9NWZ8 242 aaKnown RBP20.14■□□□□ 0.81
CLN3-219ENST00000565778 KCND3Q9UK17 655 aa20.14■□□□□ 0.81
CLN3-219ENST00000565778 POMT2Q9UKY4 750 aa20.14■□□□□ 0.81
CLN3-219ENST00000565778 ASF1AQ9Y294 204 aa20.14■□□□□ 0.81
CLN3-219ENST00000565778 HEMK1Q9Y5R4 338 aaPredicted RBP20.14■□□□□ 0.81
CLN3-219ENST00000565778 AP3B1O00203 1094 aa20.13■□□□□ 0.81
CLN3-219ENST00000565778 BTN3A1O00481 513 aa20.13■□□□□ 0.81
CLN3-219ENST00000565778 ITGB6P18564 788 aa20.13■□□□□ 0.81
CLN3-219ENST00000565778 NPY2RP49146 381 aa20.13■□□□□ 0.81
CLN3-219ENST00000565778 PLOD1Q02809 727 aaPredicted RBP20.13■□□□□ 0.81
CLN3-219ENST00000565778 ACVR1Q04771 509 aa20.13■□□□□ 0.81
CLN3-219ENST00000565778 ZNF534Q76KX8 674 aa20.13■□□□□ 0.81
CLN3-219ENST00000565778 OR5AR1Q8NGP9 310 aa20.13■□□□□ 0.81
CLN3-219ENST00000565778 PEX13Q92968 403 aa20.13■□□□□ 0.81
CLN3-219ENST00000565778 ADNPQ9H2P0 1102 aa20.13■□□□□ 0.81
CLN3-219ENST00000565778 LHX9Q9NQ69 397 aa20.13■□□□□ 0.81
CLN3-219ENST00000565778 EIF2B3Q9NR50 452 aaKnown RBP20.13■□□□□ 0.81
CLN3-219ENST00000565778 BFARQ9NZS9 450 aa20.13■□□□□ 0.81
CLN3-219ENST00000565778 PIEZO2Q9H5I5 2752 aa20.13■□□□□ 0.81
CLN3-219ENST00000565778 C2orf74A8MZ97 194 aa20.12■□□□□ 0.81
CLN3-219ENST00000565778 OAS2P29728 719 aaKnown RBP20.12■□□□□ 0.81
CLN3-219ENST00000565778 CSE1LP55060 971 aaKnown RBP20.12■□□□□ 0.81
CLN3-219ENST00000565778 POLE2P56282 527 aa20.12■□□□□ 0.81
CLN3-219ENST00000565778 CRADDP78560 199 aa20.12■□□□□ 0.81
CLN3-219ENST00000565778 ERV3-1Q14264 604 aa20.12■□□□□ 0.81
CLN3-219ENST00000565778 ATP1A1-AS1Q5TC04 95 aa20.12■□□□□ 0.81
CLN3-219ENST00000565778 HOOK3Q86VS8 718 aa20.12■□□□□ 0.81
CLN3-219ENST00000565778 TMEM126BQ8IUX1 230 aa20.12■□□□□ 0.81
CLN3-219ENST00000565778 TBC1D21Q8IYX1 336 aa20.12■□□□□ 0.81
CLN3-219ENST00000565778 OR8K5Q8NH50 307 aa20.12■□□□□ 0.81
CLN3-219ENST00000565778 ZNF501Q96CX3 271 aaPredicted RBP20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms