RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 ITIH4Q14624 930 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 PUS10Q3MIT2 529 aaKnown RBP9.07□□□□□ -0.96
VPS39-205ENST00000562258 CCNYL2Q5T2Q4 361 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 VWA5B1Q5TIE3 1220 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 CXorf57Q6NSI4 855 aaKnown RBP9.07□□□□□ -0.96
VPS39-205ENST00000562258 ADGRD1Q6QNK2 874 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 PAGE2Q7Z2X7 111 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 EXOSC8Q96B26 276 aaKnown RBP9.07□□□□□ -0.96
VPS39-205ENST00000562258 ELSPBP1Q96BH3 223 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 ZNF707Q96C28 371 aaPredicted RBP9.07□□□□□ -0.96
VPS39-205ENST00000562258 TGM7Q96PF1 710 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 FAM83CQ9BQN1 747 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 CAAP1Q9H8G2 361 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 INTS6Q9UL03 887 aaKnown RBP9.07□□□□□ -0.96
VPS39-205ENST00000562258 MRPS33Q9Y291 106 aaKnown RBP9.07□□□□□ -0.96
VPS39-205ENST00000562258 NDUFAF1Q9Y375 327 aa9.07□□□□□ -0.96
VPS39-205ENST00000562258 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.06□□□□□ -0.96
VPS39-205ENST00000562258 H7BY64 318 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 CHUKO15111 745 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 HDAC3O15379 428 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 OXTRP30559 389 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 C9orf64Q5T6V5 341 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 SMYD5Q6GMV2 418 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 C12orf40Q86WS4 652 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 OR2T34Q8NGX1 318 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 MOCOSQ96EN8 888 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 NSL1Q96IY1 281 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 PRAP1Q96NZ9 151 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 EBPLQ9BY08 206 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 TRIM15Q9C019 465 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 BRINP2Q9C0B6 783 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 TRIM39Q9HCM9 518 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 KIF17Q9P2E2 1029 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 FTSJ1Q9UET6 329 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 AK5Q9Y6K8 562 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 ZNF860A6NHJ4 632 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 EPOPA6NHQ4 379 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 CLDN9O95484 217 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 GBAP04062 536 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 GSNP06396 782 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 THRAP10827 490 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 CD6P30203 668 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 CCR3P51677 355 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 NKX3-2P78367 333 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 HMGCS1Q01581 520 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 INAVAQ3KP66 663 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 DUS1LQ6P1R4 473 aaKnown RBP9.06□□□□□ -0.96
VPS39-205ENST00000562258 TRIM40Q6P9F5 258 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 PIANPQ8IYJ0 282 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 GPR65Q8IYL9 337 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 SCML4Q8N228 414 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 DNAJB14Q8TBM8 379 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 KCNV2Q8TDN2 545 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 BTN2A2Q8WVV5 523 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 KIFC1Q9BW19 673 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 PLA2G2FQ9BZM2 168 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 NLE1Q9NVX2 485 aaPredicted RBP9.06□□□□□ -0.96
VPS39-205ENST00000562258 KLHL20Q9Y2M5 609 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 RRP15Q9Y3B9 282 aaKnown RBP9.06□□□□□ -0.96
VPS39-205ENST00000562258 HCN4Q9Y3Q4 1203 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 CCDC154A6NI56 674 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 PLIN3O60664 434 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 BPGMP07738 259 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 IL10P22301 178 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 GTF2H2Q13888 395 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 TRIM61Q5EBN2 209 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 GTF2H2CQ6P1K8 395 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 TXNDC11Q6PKC3 985 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 MBOAT1Q6ZNC8 495 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 FAM9CQ8IZT9 166 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 METTL21AQ8WXB1 218 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 OTUB1Q96FW1 271 aaPredicted RBP9.06□□□□□ -0.96
VPS39-205ENST00000562258 FAIM2Q9BWQ8 316 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 MKRN2Q9H000 416 aaKnown RBP9.06□□□□□ -0.96
VPS39-205ENST00000562258 KCNK4Q9NYG8 393 aa9.06□□□□□ -0.96
VPS39-205ENST00000562258 CD38P28907 300 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 NTSP30990 170 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 CRATP43155 626 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 ILF2Q12905 390 aaKnown RBP9.05□□□□□ -0.96
VPS39-205ENST00000562258 SLBPQ14493 270 aaKnown RBP eCLIP9.05□□□□□ -0.96
VPS39-205ENST00000562258 ACAP2Q15057 778 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 TIGD2Q4W5G0 525 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 ZNF789Q5FWF6 425 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 ATAD3BQ5T9A4 648 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 AGTRAPQ6RW13 159 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 ASB2Q96Q27 587 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 CNPPD1Q9BV87 410 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 IL17CQ9P0M4 197 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 POLR3HQ9Y535 204 aaPredicted RBP9.05□□□□□ -0.96
VPS39-205ENST00000562258 NPC1O15118 1278 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 ECI2O75521 394 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 ATP5HO75947 161 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 C8GP07360 202 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 JUPP14923 745 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 ITGB7P26010 798 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 P2RY2P41231 377 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 PDK4Q16654 411 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 CDKN3Q16667 212 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 PRAMEF13Q5VWM6 474 aa9.05□□□□□ -0.96
VPS39-205ENST00000562258 KRT80Q6KB66 452 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms