RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 TUBB2BQ9BVA1 445 aa9.94□□□□□ -0.82
LDLR-214ENST00000560628 TLR10Q9BXR5 811 aa9.94□□□□□ -0.82
LDLR-214ENST00000560628 KLHL25Q9H0H3 589 aa9.94□□□□□ -0.82
LDLR-214ENST00000560628 ETNK1Q9HBU6 452 aa9.94□□□□□ -0.82
LDLR-214ENST00000560628 IMPACTQ9P2X3 320 aa9.94□□□□□ -0.82
LDLR-214ENST00000560628 GUCA1BQ9UMX6 200 aa9.94□□□□□ -0.82
LDLR-214ENST00000560628 KCNMB2Q9Y691 235 aa9.94□□□□□ -0.82
LDLR-214ENST00000560628 PRSS21Q9Y6M0 314 aa9.94□□□□□ -0.82
LDLR-214ENST00000560628 CCDC162PA2VCL2 907 aa9.93□□□□□ -0.82
LDLR-214ENST00000560628 MROH6A6NGR9 719 aa9.93□□□□□ -0.82
LDLR-214ENST00000560628 H7C0S8 307 aa9.93□□□□□ -0.82
LDLR-214ENST00000560628 BTN3A1O00481 513 aa9.93□□□□□ -0.82
LDLR-214ENST00000560628 SCRG1O75711 98 aa9.93□□□□□ -0.82
LDLR-214ENST00000560628 IFNB1P01574 187 aa9.93□□□□□ -0.82
LDLR-214ENST00000560628 PVRP15151 417 aa9.93□□□□□ -0.82
LDLR-214ENST00000560628 MSNP26038 577 aaKnown RBP9.93□□□□□ -0.82
LDLR-214ENST00000560628 PRDX3P30048 256 aaKnown RBP9.93□□□□□ -0.82
LDLR-214ENST00000560628 GRIA1P42261 906 aa9.93□□□□□ -0.82
LDLR-214ENST00000560628 LMAN1P49257 510 aa9.93□□□□□ -0.82
LDLR-214ENST00000560628 GPS2Q13227 327 aa9.93□□□□□ -0.82
LDLR-214ENST00000560628 IGFBP7Q16270 282 aa9.93□□□□□ -0.82
LDLR-214ENST00000560628 CRTC2Q53ET0 693 aaPredicted RBP9.93□□□□□ -0.82
LDLR-214ENST00000560628 LCN10Q6JVE6 187 aa9.93□□□□□ -0.82
LDLR-214ENST00000560628 PPP1R21Q6ZMI0 780 aa9.93□□□□□ -0.82
LDLR-214ENST00000560628 SLC38A9Q8NBW4 561 aa9.93□□□□□ -0.82
LDLR-214ENST00000560628 OR52E1Q8NGJ3 308 aa9.93□□□□□ -0.82
LDLR-214ENST00000560628 HDAC10Q969S8 669 aa9.93□□□□□ -0.82
LDLR-214ENST00000560628 ZNF501Q96CX3 271 aaPredicted RBP9.93□□□□□ -0.82
LDLR-214ENST00000560628 ACTL8Q9H568 366 aa9.93□□□□□ -0.82
LDLR-214ENST00000560628 VPS37BQ9H9H4 285 aa9.93□□□□□ -0.82
LDLR-214ENST00000560628 C1GALT1Q9NS00 363 aa9.93□□□□□ -0.82
LDLR-214ENST00000560628 SLC2A6Q9UGQ3 507 aa9.93□□□□□ -0.82
LDLR-214ENST00000560628 POMT2Q9UKY4 750 aa9.93□□□□□ -0.82
LDLR-214ENST00000560628 ZNF148Q9UQR1 794 aa9.93□□□□□ -0.82
LDLR-214ENST00000560628 POLHQ9Y253 713 aa9.93□□□□□ -0.82
LDLR-214ENST00000560628 FARSAQ9Y285 508 aaKnown RBP9.93□□□□□ -0.82
LDLR-214ENST00000560628 TP53TG5Q9Y2B4 290 aa9.93□□□□□ -0.82
LDLR-214ENST00000560628 PCDHGA6Q9Y5G7 932 aa9.93□□□□□ -0.82
LDLR-214ENST00000560628 SPTA1P02549 2419 aa9.93□□□□□ -0.82
LDLR-214ENST00000560628 C21orf140B9A014 251 aa9.92□□□□□ -0.82
LDLR-214ENST00000560628 TMEM150CB9EJG8 249 aa9.92□□□□□ -0.82
LDLR-214ENST00000560628 E7EVH7 732 aa9.92□□□□□ -0.82
LDLR-214ENST00000560628 LIASO43766 372 aa9.92□□□□□ -0.82
LDLR-214ENST00000560628 OR1I1O60431 355 aa9.92□□□□□ -0.82
LDLR-214ENST00000560628 CPNE3O75131 537 aaKnown RBP9.92□□□□□ -0.82
LDLR-214ENST00000560628 AP2A2O94973 939 aa9.92□□□□□ -0.82
LDLR-214ENST00000560628 GAS8O95995 478 aa9.92□□□□□ -0.82
LDLR-214ENST00000560628 KLK3P07288 261 aaPredicted RBP9.92□□□□□ -0.82
LDLR-214ENST00000560628 ST6GAL1P15907 406 aa9.92□□□□□ -0.82
LDLR-214ENST00000560628 PTPN4P29074 926 aa9.92□□□□□ -0.82
LDLR-214ENST00000560628 STIP1P31948 543 aaKnown RBP9.92□□□□□ -0.82
LDLR-214ENST00000560628 CD151P48509 253 aa9.92□□□□□ -0.82
LDLR-214ENST00000560628 CSE1LP55060 971 aaKnown RBP9.92□□□□□ -0.82
LDLR-214ENST00000560628 RPS15P62841 145 aaKnown RBP9.92□□□□□ -0.82
LDLR-214ENST00000560628 RPA4Q13156 261 aa9.92□□□□□ -0.82
LDLR-214ENST00000560628 BOP1Q14137 746 aaKnown RBP9.92□□□□□ -0.82
LDLR-214ENST00000560628 LACTB2Q53H82 288 aaPredicted RBP9.92□□□□□ -0.82
LDLR-214ENST00000560628 PLEKHS1Q5SXH7 462 aa9.92□□□□□ -0.82
LDLR-214ENST00000560628 SEL1L2Q5TEA6 688 aa9.92□□□□□ -0.82
LDLR-214ENST00000560628 LINC00523Q86TU6 105 aa9.92□□□□□ -0.82
LDLR-214ENST00000560628 AMIGO1Q86WK6 493 aa9.92□□□□□ -0.82
LDLR-214ENST00000560628 SLC13A5Q86YT5 568 aaPredicted RBP9.92□□□□□ -0.82
LDLR-214ENST00000560628 RNF10Q8N5U6 811 aaKnown RBP9.92□□□□□ -0.82
LDLR-214ENST00000560628 OR5AR1Q8NGP9 310 aa9.92□□□□□ -0.82
LDLR-214ENST00000560628 OR8K5Q8NH50 307 aa9.92□□□□□ -0.82
LDLR-214ENST00000560628 OR1L3Q8NH93 324 aa9.92□□□□□ -0.82
LDLR-214ENST00000560628 ELMO1Q92556 727 aa9.92□□□□□ -0.82
LDLR-214ENST00000560628 CLIP3Q96DZ5 547 aa9.92□□□□□ -0.82
LDLR-214ENST00000560628 GPR87Q9BY21 358 aa9.92□□□□□ -0.82
LDLR-214ENST00000560628 EPN3Q9H201 632 aa9.92□□□□□ -0.82
LDLR-214ENST00000560628 CHST8Q9H2A9 424 aa9.92□□□□□ -0.82
LDLR-214ENST00000560628 TFB2MQ9H5Q4 396 aaKnown RBP9.92□□□□□ -0.82
LDLR-214ENST00000560628 MVB12BQ9H7P6 319 aa9.92□□□□□ -0.82
LDLR-214ENST00000560628 ACTR10Q9NZ32 417 aa9.92□□□□□ -0.82
LDLR-214ENST00000560628 TLK1Q9UKI8 766 aa9.92□□□□□ -0.82
LDLR-214ENST00000560628 BTRCQ9Y297 605 aa9.92□□□□□ -0.82
LDLR-214ENST00000560628 MAN2B2Q9Y2E5 1009 aa9.92□□□□□ -0.82
LDLR-214ENST00000560628 TDRKHQ9Y2W6 561 aaKnown RBP9.92□□□□□ -0.82
LDLR-214ENST00000560628 ZNF106Q9H2Y7 1883 aaKnown RBP9.91□□□□□ -0.82
LDLR-214ENST00000560628 C2orf74A8MZ97 194 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 MKRN2OSH3BPM6 223 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 MEN1O00255 615 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 MATN2O00339 956 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 MAP3K7O43318 606 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 DNAJB5O75953 348 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 GOT2P00505 430 aaKnown RBP9.91□□□□□ -0.82
LDLR-214ENST00000560628 ZSCAN5DPP0CG00 497 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 ATXN8OSP0DMR3 200 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 PSMA3P25788 255 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 CDC25BP30305 580 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 FOXN2P32314 431 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 FDFT1P37268 417 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 CASRP41180 1078 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 NSG1P42857 185 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 CDH17Q12864 832 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 ABRQ12979 859 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 CHAF1BQ13112 559 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 ITIH4Q14624 930 aa9.91□□□□□ -0.82
LDLR-214ENST00000560628 OASLQ15646 514 aaKnown RBP9.91□□□□□ -0.82
LDLR-214ENST00000560628 KCTD19Q17RG1 926 aaPredicted RBP9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 81.6 ms