RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 PANK3Q9H999 370 aa3.77□□□□□ -1.81
VPS13C-208ENST00000559119 PNMA2Q9UL42 364 aa3.77□□□□□ -1.81
VPS13C-208ENST00000559119 LRRFIP2Q9Y608 721 aaKnown RBP3.77□□□□□ -1.81
VPS13C-208ENST00000559119 NISCHQ9Y2I1 1504 aa3.76□□□□□ -1.81
VPS13C-208ENST00000559119 MEX3AA1L020 520 aaKnown RBP3.76□□□□□ -1.81
VPS13C-208ENST00000559119 SCAMP1O15126 338 aa3.76□□□□□ -1.81
VPS13C-208ENST00000559119 PEX14O75381 377 aa3.76□□□□□ -1.81
VPS13C-208ENST00000559119 GPIP06744 558 aa3.76□□□□□ -1.81
VPS13C-208ENST00000559119 CDC25CP30307 473 aa3.76□□□□□ -1.81
VPS13C-208ENST00000559119 PTAR1Q7Z6K3 402 aaPredicted RBP3.76□□□□□ -1.81
VPS13C-208ENST00000559119 C11orf53Q8IXP5 236 aa3.76□□□□□ -1.81
VPS13C-208ENST00000559119 DIS3L2Q8IYB7 885 aaKnown RBP3.76□□□□□ -1.81
VPS13C-208ENST00000559119 CPSF7Q8N684 471 aaKnown RBP3.76□□□□□ -1.81
VPS13C-208ENST00000559119 MTERF3Q96E29 417 aa3.76□□□□□ -1.81
VPS13C-208ENST00000559119 PERPQ96FX8 193 aa3.76□□□□□ -1.81
VPS13C-208ENST00000559119 SLC22A12Q96S37 553 aa3.76□□□□□ -1.81
VPS13C-208ENST00000559119 ABHD6Q9BV23 337 aa3.76□□□□□ -1.81
VPS13C-208ENST00000559119 FBXL17Q9UF56 701 aa3.76□□□□□ -1.81
VPS13C-208ENST00000559119 MSGN1A6NI15 193 aa3.75□□□□□ -1.81
VPS13C-208ENST00000559119 E9PI62 339 aa3.75□□□□□ -1.81
VPS13C-208ENST00000559119 SOCS3O14543 225 aa3.75□□□□□ -1.81
VPS13C-208ENST00000559119 NDUFS4O43181 175 aa3.75□□□□□ -1.81
VPS13C-208ENST00000559119 GH2P01242 217 aa3.75□□□□□ -1.81
VPS13C-208ENST00000559119 CA6P23280 308 aa3.75□□□□□ -1.81
VPS13C-208ENST00000559119 MMP12P39900 470 aa3.75□□□□□ -1.81
VPS13C-208ENST00000559119 PPP2R2BQ00005 443 aa3.75□□□□□ -1.81
VPS13C-208ENST00000559119 PCGF3Q3KNV8 242 aa3.75□□□□□ -1.81
VPS13C-208ENST00000559119 TMEM198Q66K66 360 aa3.75□□□□□ -1.81
VPS13C-208ENST00000559119 Q6ZR54 194 aa3.75□□□□□ -1.81
VPS13C-208ENST00000559119 ZNF584Q8IVC4 421 aa3.75□□□□□ -1.81
VPS13C-208ENST00000559119 PRSS33Q8NF86 280 aa3.75□□□□□ -1.81
VPS13C-208ENST00000559119 OLIG1Q8TAK6 271 aa3.75□□□□□ -1.81
VPS13C-208ENST00000559119 SLCO2A1Q92959 643 aa3.75□□□□□ -1.81
VPS13C-208ENST00000559119 NCAPGQ9BPX3 1015 aa3.75□□□□□ -1.81
VPS13C-208ENST00000559119 HHATLQ9HCP6 504 aa3.75□□□□□ -1.81
VPS13C-208ENST00000559119 PREBQ9HCU5 417 aa3.75□□□□□ -1.81
VPS13C-208ENST00000559119 EHD2Q9NZN4 543 aa3.75□□□□□ -1.81
VPS13C-208ENST00000559119 NPAP1Q9NZP6 1156 aa3.75□□□□□ -1.81
VPS13C-208ENST00000559119 THEGQ9P2T0 379 aa3.75□□□□□ -1.81
VPS13C-208ENST00000559119 PPP1R3CQ9UQK1 317 aa3.75□□□□□ -1.81
VPS13C-208ENST00000559119 MTMR6Q9Y217 621 aa3.75□□□□□ -1.81
VPS13C-208ENST00000559119 ASTN2O75129 1339 aaPredicted RBP3.74□□□□□ -1.81
VPS13C-208ENST00000559119 IGHV3OR16-10A0A075B7F0 116 aa3.74□□□□□ -1.81
VPS13C-208ENST00000559119 ZNF195O14628 629 aa3.74□□□□□ -1.81
VPS13C-208ENST00000559119 IGKV3-15P01624 115 aa3.74□□□□□ -1.81
VPS13C-208ENST00000559119 CA4P22748 312 aa3.74□□□□□ -1.81
VPS13C-208ENST00000559119 RGS2P41220 211 aa3.74□□□□□ -1.81
VPS13C-208ENST00000559119 GSCP56915 257 aaPredicted RBP3.74□□□□□ -1.81
VPS13C-208ENST00000559119 SNRPEP62304 92 aaKnown RBP3.74□□□□□ -1.81
VPS13C-208ENST00000559119 NFATC2Q13469 925 aa3.74□□□□□ -1.81
VPS13C-208ENST00000559119 EIF4A2Q14240 407 aaKnown RBP3.74□□□□□ -1.81
VPS13C-208ENST00000559119 FASTKD3Q14CZ7 662 aaKnown RBP3.74□□□□□ -1.81
VPS13C-208ENST00000559119 PPFIBP2Q8ND30 876 aa3.74□□□□□ -1.81
VPS13C-208ENST00000559119 ARHGEF2Q92974 986 aaKnown RBP3.74□□□□□ -1.81
VPS13C-208ENST00000559119 ELMOD3Q96FG2 381 aa3.74□□□□□ -1.81
VPS13C-208ENST00000559119 FAM81BQ96LP2 452 aa3.74□□□□□ -1.81
VPS13C-208ENST00000559119 C1orf74Q96LT6 269 aa3.74□□□□□ -1.81
VPS13C-208ENST00000559119 GAD1Q99259 594 aa3.74□□□□□ -1.81
VPS13C-208ENST00000559119 ATP13A3Q9H7F0 1226 aa3.74□□□□□ -1.81
VPS13C-208ENST00000559119 SETD4Q9NVD3 440 aa3.74□□□□□ -1.81
VPS13C-208ENST00000559119 LUZP4Q9P127 313 aa3.74□□□□□ -1.81
VPS13C-208ENST00000559119 MUTYHQ9UIF7 546 aa3.74□□□□□ -1.81
VPS13C-208ENST00000559119 ZDHHC2Q9UIJ5 367 aa3.74□□□□□ -1.81
VPS13C-208ENST00000559119 EXO1Q9UQ84 846 aaKnown RBP3.74□□□□□ -1.81
VPS13C-208ENST00000559119 LAS1LQ9Y4W2 734 aaKnown RBP3.74□□□□□ -1.81
VPS13C-208ENST00000559119 A6NLC8 198 aa3.73□□□□□ -1.81
VPS13C-208ENST00000559119 IDH3BO43837 385 aa3.73□□□□□ -1.81
VPS13C-208ENST00000559119 MAGEC1O60732 1142 aa3.73□□□□□ -1.81
VPS13C-208ENST00000559119 CCNDBP1O95273 360 aa3.73□□□□□ -1.81
VPS13C-208ENST00000559119 C22orf31O95567 290 aa3.73□□□□□ -1.81
VPS13C-208ENST00000559119 IGHV3-13P01766 116 aa3.73□□□□□ -1.81
VPS13C-208ENST00000559119 EIF2S1P05198 315 aaKnown RBP3.73□□□□□ -1.81
VPS13C-208ENST00000559119 KRTAP1-4P0C5Y4 121 aa3.73□□□□□ -1.81
VPS13C-208ENST00000559119 PRG2P13727 222 aa3.73□□□□□ -1.81
VPS13C-208ENST00000559119 RBMS1P29558 406 aaKnown RBP3.73□□□□□ -1.81
VPS13C-208ENST00000559119 HERV-K104P61576 105 aa3.73□□□□□ -1.81
VPS13C-208ENST00000559119 RARS2Q5T160 578 aaKnown RBP3.73□□□□□ -1.81
VPS13C-208ENST00000559119 ZNF519Q8TB69 540 aa3.73□□□□□ -1.81
VPS13C-208ENST00000559119 TBC1D16Q8TBP0 767 aa3.73□□□□□ -1.81
VPS13C-208ENST00000559119 ZPLD1Q8TCW7 415 aa3.73□□□□□ -1.81
VPS13C-208ENST00000559119 AZIN2Q96A70 460 aa3.73□□□□□ -1.81
VPS13C-208ENST00000559119 ARSGQ96EG1 525 aa3.73□□□□□ -1.81
VPS13C-208ENST00000559119 DACH2Q96NX9 599 aa3.73□□□□□ -1.81
VPS13C-208ENST00000559119 DNAJC18Q9H819 358 aa3.73□□□□□ -1.81
VPS13C-208ENST00000559119 A4GALTQ9NPC4 353 aa3.73□□□□□ -1.81
VPS13C-208ENST00000559119 SPHK2Q9NRA0 654 aa3.73□□□□□ -1.81
VPS13C-208ENST00000559119 PANK4Q9NVE7 773 aa3.73□□□□□ -1.81
VPS13C-208ENST00000559119 OSGIN1Q9UJX0 560 aa3.73□□□□□ -1.81
VPS13C-208ENST00000559119 SOS1Q07889 1333 aaPredicted RBP3.72□□□□□ -1.81
VPS13C-208ENST00000559119 PRSS51A0A1B0GVH4 220 aa3.72□□□□□ -1.81
VPS13C-208ENST00000559119 KLLNB2CW77 178 aa3.72□□□□□ -1.81
VPS13C-208ENST00000559119 EPM2AB3EWF7 344 aa3.72□□□□□ -1.81
VPS13C-208ENST00000559119 OPRL1P41146 370 aa3.72□□□□□ -1.81
VPS13C-208ENST00000559119 LIMK2P53671 638 aa3.72□□□□□ -1.81
VPS13C-208ENST00000559119 CASP6P55212 293 aa3.72□□□□□ -1.81
VPS13C-208ENST00000559119 PAX9P55771 341 aa3.72□□□□□ -1.81
VPS13C-208ENST00000559119 LINGO4Q6UY18 593 aa3.72□□□□□ -1.81
VPS13C-208ENST00000559119 Q6ZRP5 223 aa3.72□□□□□ -1.81
VPS13C-208ENST00000559119 ARID3BQ8IVW6 561 aaPredicted RBP3.72□□□□□ -1.81
VPS13C-208ENST00000559119 MAPKAPK5-AS1Q8N8E1 139 aa3.72□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms