RNA–Protein interactions for RNA: ENST00000554486.1

SCFD1-212, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 819 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-212ENST00000554486 TNFRSF8P28908 595 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 SERPINA4P29622 427 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 DRD3P35462 400 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 MAGEA3P43357 314 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 RPS9P46781 194 aaKnown RBP6.28□□□□□ -1.4
SCFD1-212ENST00000554486 PSMD8P48556 350 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 LMAN1P49257 510 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 PLTPP55058 493 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 RPS14P62263 151 aaKnown RBP6.28□□□□□ -1.4
SCFD1-212ENST00000554486 SATB1Q01826 763 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 CALCOCO2Q13137 446 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 MSLNQ13421 630 aaPredicted RBP6.28□□□□□ -1.4
SCFD1-212ENST00000554486 CUL1Q13616 776 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 GALNT3Q14435 633 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 PTPRRQ15256 657 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 ELF2Q15723 593 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 SLC1A5Q15758 541 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 CST6Q15828 149 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 C19orf54Q5BKX5 351 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 ZNF805Q5CZA5 627 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 SIRPB2Q5JXA9 342 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 EOGTQ5NDL2 527 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 FNBP1LQ5T0N5 605 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 ARMC12Q5T9G4 340 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 NAPEPLDQ6IQ20 393 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 LRRC8BQ6P9F7 803 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 GDPD4Q6W3E5 623 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 CCNI2Q6ZMN8 369 aaPredicted RBP6.28□□□□□ -1.4
SCFD1-212ENST00000554486 PARS2Q7L3T8 475 aaKnown RBP6.28□□□□□ -1.4
SCFD1-212ENST00000554486 MMAAQ8IVH4 418 aaKnown RBP6.28□□□□□ -1.4
SCFD1-212ENST00000554486 GSPT2Q8IYD1 628 aaKnown RBP6.28□□□□□ -1.4
SCFD1-212ENST00000554486 GPR135Q8IZ08 494 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 ZCCHC9Q8N567 271 aaKnown RBP6.28□□□□□ -1.4
SCFD1-212ENST00000554486 SLC25A41Q8N5S1 370 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 ANKRD53Q8N9V6 530 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 BBOF1Q8ND07 529 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 LPCAT1Q8NF37 534 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 PDCD6IPQ8WUM4 868 aaKnown RBP6.28□□□□□ -1.4
SCFD1-212ENST00000554486 SNX33Q8WV41 574 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 PIH1D2Q8WWB5 315 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 NRG4Q8WWG1 115 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 IFT81Q8WYA0 676 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 RUBCNQ92622 972 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 NEIL1Q96FI4 390 aaPredicted RBP6.28□□□□□ -1.4
SCFD1-212ENST00000554486 LRIG1Q96JA1 1093 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 LOXL4Q96JB6 756 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 ZNF641Q96N77 438 aaPredicted RBP6.28□□□□□ -1.4
SCFD1-212ENST00000554486 KLHL32Q96NJ5 620 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 SERPINB12Q96P63 405 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 WDR83Q9BRX9 315 aaKnown RBP6.28□□□□□ -1.4
SCFD1-212ENST00000554486 SSBP3Q9BWW4 388 aaPredicted RBP6.28□□□□□ -1.4
SCFD1-212ENST00000554486 FSD1LQ9BXM9 530 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 PARD6BQ9BYG5 372 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 FAM129AQ9BZQ8 928 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 ENKD1Q9H0I2 346 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 SLC6A15Q9H2J7 730 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 PIH1D1Q9NWS0 290 aaKnown RBP6.28□□□□□ -1.4
SCFD1-212ENST00000554486 GOLGA6AQ9NYA3 693 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 PPP4R1LQ9P1A2 415 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 DLGAP2Q9P1A6 1054 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 DKK3Q9UBP4 350 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 RAB21Q9UL25 225 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 NFU1Q9UMS0 254 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 PPIL1Q9Y3C6 166 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 TRPM6Q9BX84 2022 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 BPTFQ12830 3046 aa6.28□□□□□ -1.4
SCFD1-212ENST00000554486 SCN8AQ9UQD0 1980 aa6.27□□□□□ -1.4
SCFD1-212ENST00000554486 NPEPPSL1A6NEC2 478 aa6.27□□□□□ -1.41
SCFD1-212ENST00000554486 C16orf96A6NNT2 1141 aa6.27□□□□□ -1.41
SCFD1-212ENST00000554486 ANKRD66B4E2M5 251 aa6.27□□□□□ -1.41
SCFD1-212ENST00000554486 C1QTNF3-AMACRE9PGA6 284 aa6.27□□□□□ -1.41
SCFD1-212ENST00000554486 PLK4O00444 970 aa6.27□□□□□ -1.41
SCFD1-212ENST00000554486 KPNA3O00505 521 aaPredicted RBP6.27□□□□□ -1.41
SCFD1-212ENST00000554486 NDC80O14777 642 aa6.27□□□□□ -1.41
SCFD1-212ENST00000554486 PPFIA2O75334 1257 aa6.27□□□□□ -1.41
SCFD1-212ENST00000554486 BANF1O75531 89 aa6.27□□□□□ -1.41
SCFD1-212ENST00000554486 IL1BP01584 269 aa6.27□□□□□ -1.41
SCFD1-212ENST00000554486 FGF1P05230 155 aa6.27□□□□□ -1.41
SCFD1-212ENST00000554486 ALPIP09923 528 aa6.27□□□□□ -1.41
SCFD1-212ENST00000554486 PIRTP0C851 137 aa6.27□□□□□ -1.41
SCFD1-212ENST00000554486 MLNP12872 115 aa6.27□□□□□ -1.41
SCFD1-212ENST00000554486 TPH1P17752 444 aa6.27□□□□□ -1.41
SCFD1-212ENST00000554486 CTPS1P17812 591 aa6.27□□□□□ -1.41
SCFD1-212ENST00000554486 GABRG2P18507 467 aa6.27□□□□□ -1.41
SCFD1-212ENST00000554486 HLA-DPA1P20036 260 aa6.27□□□□□ -1.41
SCFD1-212ENST00000554486 CA4P22748 312 aa6.27□□□□□ -1.41
SCFD1-212ENST00000554486 MGAT1P26572 445 aa6.27□□□□□ -1.41
SCFD1-212ENST00000554486 SLC8A1P32418 973 aa6.27□□□□□ -1.41
SCFD1-212ENST00000554486 P2RY2P41231 377 aa6.27□□□□□ -1.41
SCFD1-212ENST00000554486 ARL4CP56559 192 aa6.27□□□□□ -1.41
SCFD1-212ENST00000554486 RPL26P61254 145 aaKnown RBP6.27□□□□□ -1.41
SCFD1-212ENST00000554486 CRADDP78560 199 aa6.27□□□□□ -1.41
SCFD1-212ENST00000554486 MEF2AQ02078 507 aaPredicted RBP6.27□□□□□ -1.41
SCFD1-212ENST00000554486 CAV1Q03135 178 aa6.27□□□□□ -1.41
SCFD1-212ENST00000554486 CDH17Q12864 832 aa6.27□□□□□ -1.41
SCFD1-212ENST00000554486 MTM1Q13496 603 aa6.27□□□□□ -1.41
SCFD1-212ENST00000554486 HLTFQ14527 1009 aaKnown RBP eCLIP6.27□□□□□ -1.41
SCFD1-212ENST00000554486 STARD3Q14849 445 aa6.27□□□□□ -1.41
SCFD1-212ENST00000554486 FASTKD3Q14CZ7 662 aaKnown RBP6.27□□□□□ -1.41
SCFD1-212ENST00000554486 FAM153CQ494X1 144 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms