RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 KPNA3O00505 521 aaPredicted RBP11.48□□□□□ -0.57
SHMT2-212ENST00000554467 RPS17P08708 135 aaKnown RBP11.48□□□□□ -0.57
SHMT2-212ENST00000554467 HNRNPA1P09651 372 aaKnown RBP eCLIP11.48□□□□□ -0.57
SHMT2-212ENST00000554467 HGFP14210 728 aa11.48□□□□□ -0.57
SHMT2-212ENST00000554467 CTBSQ01459 385 aa11.48□□□□□ -0.57
SHMT2-212ENST00000554467 BOP1Q14137 746 aaKnown RBP11.48□□□□□ -0.57
SHMT2-212ENST00000554467 ARHGEF7Q14155 803 aa11.48□□□□□ -0.57
SHMT2-212ENST00000554467 GRIN2CQ14957 1233 aa11.48□□□□□ -0.57
SHMT2-212ENST00000554467 C16orf72Q14CZ0 275 aa11.48□□□□□ -0.57
SHMT2-212ENST00000554467 DHRS4L2Q6PKH6 230 aa11.48□□□□□ -0.57
SHMT2-212ENST00000554467 AHI1Q8N157 1196 aa11.48□□□□□ -0.57
SHMT2-212ENST00000554467 ZBTB2Q8N680 514 aa11.48□□□□□ -0.57
SHMT2-212ENST00000554467 RP9Q8TA86 221 aaKnown RBP11.48□□□□□ -0.57
SHMT2-212ENST00000554467 ISG20Q96AZ6 181 aaKnown RBP11.48□□□□□ -0.57
SHMT2-212ENST00000554467 FAR2Q96K12 515 aa11.48□□□□□ -0.57
SHMT2-212ENST00000554467 TRIM8Q9BZR9 551 aa11.48□□□□□ -0.57
SHMT2-212ENST00000554467 GMPR2Q9P2T1 348 aaKnown RBP11.48□□□□□ -0.57
SHMT2-212ENST00000554467 POLG2Q9UHN1 485 aa11.48□□□□□ -0.57
SHMT2-212ENST00000554467 COQ6Q9Y2Z9 468 aa11.48□□□□□ -0.57
SHMT2-212ENST00000554467 DTNAQ9Y4J8 743 aa11.48□□□□□ -0.57
SHMT2-212ENST00000554467 FUOMA2VDF0 154 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 C5orf67F2Z3F1 127 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 E2F3O00716 465 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 FGF19O95750 216 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 PDCD4Q53EL6 469 aaKnown RBP11.47□□□□□ -0.57
SHMT2-212ENST00000554467 KANK2Q63ZY3 851 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 LETMD1Q6P1Q0 360 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 FBXW8Q8N3Y1 598 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 ATP6V1E2Q96A05 226 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 COPS8Q99627 209 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 HEPHQ9BQS7 1158 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 WDR41Q9HAD4 459 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 PCDHB1Q9Y5F3 818 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 CROCCQ5TZA2 2017 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 TRBV5-4A0A0C4DH59 114 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 EPOPA6NHQ4 379 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 OR2AG2A6NM03 316 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 FFAR3O14843 346 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 GPR42O15529 346 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 FFAR2O15552 330 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 FUCA1P04066 466 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 XRCC1P18887 633 aaPredicted RBP11.47□□□□□ -0.57
SHMT2-212ENST00000554467 CCR7P32248 378 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 SPINT3P49223 89 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 HTR6P50406 440 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 UBE3AQ05086 875 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 RALGDSQ12967 914 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 GPRC6AQ5T6X5 926 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 CCDC80Q76M96 950 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 METTL3Q86U44 580 aaKnown RBP11.47□□□□□ -0.57
SHMT2-212ENST00000554467 VRK3Q8IV63 474 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 MYO1HQ8N1T3 1032 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 FOXJ1Q92949 421 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 LRCH3Q96II8 777 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 LRGUKQ96M69 825 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 MCCC1Q96RQ3 725 aaPredicted RBP11.47□□□□□ -0.57
SHMT2-212ENST00000554467 SEMA6AQ9H2E6 1030 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 AP4B1Q9Y6B7 739 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 NR5A2O00482 541 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 TIMP2P16035 220 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 NELFEP18615 380 aaKnown RBP11.47□□□□□ -0.57
SHMT2-212ENST00000554467 XPAP23025 273 aaPredicted RBP11.47□□□□□ -0.57
SHMT2-212ENST00000554467 NNMTP40261 264 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 ERVPABLB-1P60509 514 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 GALNT1Q10472 559 aaPredicted RBP11.47□□□□□ -0.57
SHMT2-212ENST00000554467 CHSY3Q70JA7 882 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 NPAS3Q8IXF0 933 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 CELF5Q8N6W0 485 aaKnown RBP11.47□□□□□ -0.57
SHMT2-212ENST00000554467 OR2T11Q8NH01 316 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 FGF13Q92913 245 aa11.47□□□□□ -0.57
SHMT2-212ENST00000554467 CPEB1Q9BZB8 566 aaKnown RBP11.47□□□□□ -0.57
SHMT2-212ENST00000554467 MTIF3Q9H2K0 278 aaKnown RBP11.47□□□□□ -0.57
SHMT2-212ENST00000554467 FAM32AQ9Y421 112 aaKnown RBP11.47□□□□□ -0.57
SHMT2-212ENST00000554467 TCF20Q9UGU0 1960 aaKnown RBP11.46□□□□□ -0.57
SHMT2-212ENST00000554467 ARHGAP10A1A4S6 786 aa11.46□□□□□ -0.57
SHMT2-212ENST00000554467 ZNF197O14709 1029 aa11.46□□□□□ -0.57
SHMT2-212ENST00000554467 INPP4BO15327 924 aa11.46□□□□□ -0.57
SHMT2-212ENST00000554467 PFKLP17858 780 aa11.46□□□□□ -0.57
SHMT2-212ENST00000554467 PRDX6P30041 224 aa11.46□□□□□ -0.57
SHMT2-212ENST00000554467 HOXA9P31269 272 aa11.46□□□□□ -0.57
SHMT2-212ENST00000554467 CEACAM7Q14002 265 aa11.46□□□□□ -0.57
SHMT2-212ENST00000554467 SGO1Q5FBB7 561 aa11.46□□□□□ -0.57
SHMT2-212ENST00000554467 BHLHE22Q8NFJ8 381 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-212ENST00000554467 RIOK2Q9BVS4 552 aaKnown RBP11.46□□□□□ -0.57
SHMT2-212ENST00000554467 PBX4Q9BYU1 374 aa11.46□□□□□ -0.57
SHMT2-212ENST00000554467 CEP44Q9C0F1 390 aa11.46□□□□□ -0.57
SHMT2-212ENST00000554467 RSL24D1Q9UHA3 163 aaKnown RBP11.46□□□□□ -0.57
SHMT2-212ENST00000554467 FAF1Q9UNN5 650 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-212ENST00000554467 C2orf16Q68DN1 1984 aa11.46□□□□□ -0.58
SHMT2-212ENST00000554467 TAPBPO15533 448 aa11.46□□□□□ -0.58
SHMT2-212ENST00000554467 TNFAIP8O95379 198 aa11.46□□□□□ -0.58
SHMT2-212ENST00000554467 YBX1P67809 324 aaKnown RBP11.46□□□□□ -0.58
SHMT2-212ENST00000554467 AAK1Q2M2I8 961 aa11.46□□□□□ -0.58
SHMT2-212ENST00000554467 VPS26BQ4G0F5 336 aa11.46□□□□□ -0.58
SHMT2-212ENST00000554467 GPRIN3Q6ZVF9 776 aa11.46□□□□□ -0.58
SHMT2-212ENST00000554467 GOLGA7Q7Z5G4 137 aa11.46□□□□□ -0.58
SHMT2-212ENST00000554467 FUNDC1Q8IVP5 155 aa11.46□□□□□ -0.58
SHMT2-212ENST00000554467 TEX37Q96LM6 180 aa11.46□□□□□ -0.58
SHMT2-212ENST00000554467 ZNF641Q96N77 438 aaPredicted RBP11.46□□□□□ -0.58
SHMT2-212ENST00000554467 LYSMD1Q96S90 227 aa11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms