RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 CXorf57Q6NSI4 855 aaKnown RBP7.54□□□□□ -1.2
LIMA1-216ENST00000552909 CYP2R1Q6VVX0 501 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 NAPRTQ6XQN6 538 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 PLEKHG7Q6ZR37 379 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 HEATR4Q86WZ0 1026 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 SDR16C5Q8N3Y7 309 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 PCDH20Q8N6Y1 951 aaKnown RBP7.54□□□□□ -1.2
LIMA1-216ENST00000552909 NETO2Q8NC67 525 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 ANKK1Q8NFD2 765 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 HMGB4Q8WW32 186 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 ZNF486Q96H40 463 aaPredicted RBP7.54□□□□□ -1.2
LIMA1-216ENST00000552909 MYO19Q96H55 970 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 FBXL20Q96IG2 436 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 FAR2Q96K12 515 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 SIGLEC10Q96LC7 697 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 GABRG3Q99928 467 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 YTHDF1Q9BYJ9 559 aaKnown RBP7.54□□□□□ -1.2
LIMA1-216ENST00000552909 HOXD1Q9GZZ0 328 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 OSBPL2Q9H1P3 480 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 TP63Q9H3D4 680 aaPredicted RBP7.54□□□□□ -1.2
LIMA1-216ENST00000552909 MTG2Q9H4K7 406 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 CD93Q9NPY3 652 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 MOCS1Q9NZB8 636 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 HACD3Q9P035 362 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 CDYLQ9Y232 598 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 PCDHGA7Q9Y5G6 932 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 RNF103-CHMP3A0A140T963 221 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 A0A1B0GVM2 712 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 TYW5A2RUC4 315 aaKnown RBP7.54□□□□□ -1.2
LIMA1-216ENST00000552909 PRR23AA6NEV1 266 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 TCAF2A6NFQ2 919 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 E7ENX8 843 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 E9PAM4 449 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 M0QX08 132 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 DLGAP1O14490 977 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 AXIN1O15169 862 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 LRIG2O94898 1065 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 C7P10643 843 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 ERCC2P18074 760 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 GABRG2P18507 467 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 TGM2P21980 687 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 CSKP41240 450 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 MAGEA3P43357 314 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 C5orf22Q49AR2 442 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 PPM1JQ5JR12 505 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 PITRM1Q5JRX3 1037 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 FAM182AQ5T1J6 154 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 ATAD3BQ5T9A4 648 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 NCBP2-AS2Q69YL0 99 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 ZC3H14Q6PJT7 736 aaKnown RBP7.54□□□□□ -1.2
LIMA1-216ENST00000552909 CYS1Q717R9 158 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 TAS2R42Q7RTR8 314 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 TFAP2DQ7Z6R9 452 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 DSG4Q86SJ6 1040 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 WDR5BQ86VZ2 330 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 RAVER1Q8IY67 606 aaKnown RBP7.54□□□□□ -1.2
LIMA1-216ENST00000552909 PARP8Q8N3A8 854 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 MPP5Q8N3R9 675 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 DCLK2Q8N568 766 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 FAM160A2Q8N612 972 aaPredicted RBP7.54□□□□□ -1.2
LIMA1-216ENST00000552909 Q8N9G6 341 aaPredicted RBP7.54□□□□□ -1.2
LIMA1-216ENST00000552909 ALG14Q96F25 216 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 RPL10LQ96L21 214 aaKnown RBP7.54□□□□□ -1.2
LIMA1-216ENST00000552909 C1orf74Q96LT6 269 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 MKRN2Q9H000 416 aaKnown RBP7.54□□□□□ -1.2
LIMA1-216ENST00000552909 TMEM245Q9H330 911 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 MARCH7Q9H992 704 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 FANCEQ9HB96 536 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 MAGEE1Q9HCI5 957 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 AKIP1Q9NQ31 210 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 NDFIP2Q9NV92 336 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 ARMC1Q9NVT9 282 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 RCOR3Q9P2K3 495 aaPredicted RBP7.54□□□□□ -1.2
LIMA1-216ENST00000552909 SLCO3A1Q9UIG8 710 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 RAP2CQ9Y3L5 183 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 CKAP5Q14008 2032 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 NUP205Q92621 2012 aa7.54□□□□□ -1.2
LIMA1-216ENST00000552909 CROCCQ5TZA2 2017 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 IGLV3-10A0A075B6K4 115 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 A6NL46 340 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 GOLGA8CPA6NN73 597 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 DRGXA6NNA5 263 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 PHGDHO43175 533 aaKnown RBP7.53□□□□□ -1.2
LIMA1-216ENST00000552909 TIMM44O43615 452 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 GFRA3O60609 400 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 TRIM13O60858 407 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 DEAF1O75398 565 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-216ENST00000552909 CLIC3O95833 236 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 EPHX1P07099 455 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 JUNBP17275 347 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-216ENST00000552909 NDUFV2P19404 249 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 MPSTP25325 297 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 GARSP41250 739 aaKnown RBP7.53□□□□□ -1.2
LIMA1-216ENST00000552909 LEPRP48357 1165 aaKnown RBP7.53□□□□□ -1.2
LIMA1-216ENST00000552909 KRT6CP48668 564 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 HCAR3P49019 387 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 NR2C2P49116 596 aa7.53□□□□□ -1.2
LIMA1-216ENST00000552909 STK19P49842 368 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-216ENST00000552909 RPL14P50914 215 aaKnown RBP7.53□□□□□ -1.2
LIMA1-216ENST00000552909 MPP1Q00013 466 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms