RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 NEUROG1Q92886 237 aa4.73□□□□□ -1.65
LIMA1-205ENST00000550592 RMDN1Q96DB5 314 aa4.73□□□□□ -1.65
LIMA1-205ENST00000550592 SPACA9Q96E40 222 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-205ENST00000550592 MOV10L1Q9BXT6 1211 aaKnown RBP4.73□□□□□ -1.65
LIMA1-205ENST00000550592 GOLPH3LQ9H4A5 285 aa4.73□□□□□ -1.65
LIMA1-205ENST00000550592 SBNO1A3KN83 1393 aa4.73□□□□□ -1.65
LIMA1-205ENST00000550592 KIF15Q9NS87 1388 aa4.73□□□□□ -1.65
LIMA1-205ENST00000550592 TAF1P21675 1872 aa4.73□□□□□ -1.65
LIMA1-205ENST00000550592 OVOS2A0A0G2JMS6 1433 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 OVOS2A0A0J9YW53 1432 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 OVOS2Q6IE36 1432 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 ERBINQ96RT1 1412 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 MAGEA13PA6NCF6 341 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 OR5K3A6NET4 321 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 URADA6NGE7 173 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 HEPACAM2A8MVW5 462 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 PLK4O00444 970 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 DVL1O14640 695 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 IPO8O15397 1037 aaKnown RBP4.72□□□□□ -1.65
LIMA1-205ENST00000550592 SSX4O60224 188 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 LDB3O75112 727 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 WISP2O76076 250 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 NGFRP08138 427 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 QDPRP09417 244 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 DAOP14920 347 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 PFKFB1P16118 471 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 ZNF41P51814 821 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-205ENST00000550592 CSE1LP55060 971 aaKnown RBP4.72□□□□□ -1.65
LIMA1-205ENST00000550592 CD81P60033 236 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 ZNF234Q14588 700 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 NR1D2Q14995 579 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 TMEM35AQ53FP2 167 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 CST9LP1Q5W188 147 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 ALS2CLQ60I27 953 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 CHST3Q7LGC8 479 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 CCDC186Q7Z3E2 898 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 TMPRSS12Q86WS5 348 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 TMEM219Q86XT9 240 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 C1orf52Q8N6N3 182 aaKnown RBP4.72□□□□□ -1.65
LIMA1-205ENST00000550592 ZBTB8BQ8NAP8 495 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-205ENST00000550592 XXYLT1Q8NBI6 393 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 PAPD5Q8NDF8 572 aaKnown RBP4.72□□□□□ -1.65
LIMA1-205ENST00000550592 CDCA5Q96FF9 252 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 ZNF479Q96JC4 524 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 OR6C1Q96RD1 312 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 C16orf70Q9BSU1 422 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 ANKRD2Q9GZV1 360 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 ANKZF1Q9H8Y5 726 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 UBTD1Q9HAC8 227 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 PIH1D3Q9NQM4 214 aaKnown RBP4.72□□□□□ -1.65
LIMA1-205ENST00000550592 TCP11L1Q9NUJ3 509 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 KLHL9Q9P2J3 617 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 KCNS2Q9ULS6 477 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 YIPF1Q9Y548 306 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 ARHGEF5Q12774 1597 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 GCC2Q8IWJ2 1684 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 COL14A1Q05707 1796 aaKnown RBP4.72□□□□□ -1.65
LIMA1-205ENST00000550592 HFM1A2PYH4 1435 aa4.72□□□□□ -1.65
LIMA1-205ENST00000550592 GOLGB1Q14789 3259 aaKnown RBP4.71□□□□□ -1.66
LIMA1-205ENST00000550592 A0A0G2JPF8 293 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 EDDM13A0A1B0GTR0 161 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 ZCWPW2A0A1B0GU75 182 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 ANKRD66B4E2M5 251 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 HNRNPCL3B7ZW38 293 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 SMAD6O43541 496 aaKnown RBP4.71□□□□□ -1.66
LIMA1-205ENST00000550592 SPRY1O43609 319 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-205ENST00000550592 BUD23O43709 281 aaKnown RBP4.71□□□□□ -1.66
LIMA1-205ENST00000550592 NTN1O95631 604 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 TRUB2O95900 331 aaKnown RBP4.71□□□□□ -1.66
LIMA1-205ENST00000550592 FYNP06241 537 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 LINGO3P0C6S8 592 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 FAM106CPP0CH98 169 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 HNRNPCL4P0DMR1 293 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 USP8P40818 1118 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 HTR6P50406 440 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 PDLIM4P50479 330 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 DSCR9P59020 149 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 EEF1A1P68104 462 aaKnown RBP4.71□□□□□ -1.66
LIMA1-205ENST00000550592 CDK3Q00526 305 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 GTF2H2Q13888 395 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 SF3B4Q15427 424 aaKnown RBP eCLIP4.71□□□□□ -1.66
LIMA1-205ENST00000550592 LETM2Q2VYF4 491 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 EEF1A1P5Q5VTE0 462 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 GTF2H2CQ6P1K8 395 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 FIGLAQ6QHK4 219 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 FAM198BQ6UWH4 519 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 ASB18Q6ZVZ8 466 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 SLFN11Q7Z7L1 901 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 ANKRD23Q86SG2 305 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 SPATA2LQ8IUW3 424 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-205ENST00000550592 ODF3L1Q8IXM7 274 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 Q8N9P0 234 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-205ENST00000550592 OR6J1Q8NGC5 347 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 OR52I2Q8NH67 350 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 LILRB1Q8NHL6 650 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-205ENST00000550592 EXD1Q8NHP7 514 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 PPP4R1Q8TF05 950 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 TEKT4Q8WW24 435 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 FIG4Q92562 907 aa4.71□□□□□ -1.66
LIMA1-205ENST00000550592 VPS33AQ96AX1 596 aa4.71□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms