RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 LINC01553A4QN01 128 aa15.99■□□□□ 0.15
COL4A1-204ENST00000543140 RSL1D1O76021 490 aaKnown RBP15.99■□□□□ 0.15
COL4A1-204ENST00000543140 ANXA5P08758 320 aa15.99■□□□□ 0.15
COL4A1-204ENST00000543140 SLC7A1P30825 629 aa15.99■□□□□ 0.15
COL4A1-204ENST00000543140 NNMTP40261 264 aa15.99■□□□□ 0.15
COL4A1-204ENST00000543140 PTGR1Q14914 329 aa15.99■□□□□ 0.15
COL4A1-204ENST00000543140 ZXDCQ2QGD7 858 aaPredicted RBP15.99■□□□□ 0.15
COL4A1-204ENST00000543140 TMEM126BQ8IUX1 230 aa15.99■□□□□ 0.15
COL4A1-204ENST00000543140 TSPEARQ8WU66 669 aa15.99■□□□□ 0.15
COL4A1-204ENST00000543140 PYCR2Q96C36 320 aa15.99■□□□□ 0.15
COL4A1-204ENST00000543140 BTBD9Q96Q07 612 aa15.99■□□□□ 0.15
COL4A1-204ENST00000543140 ZFP14Q9HCL3 533 aa15.99■□□□□ 0.15
COL4A1-204ENST00000543140 HEBP1Q9NRV9 189 aa15.99■□□□□ 0.15
COL4A1-204ENST00000543140 ZNF490Q9ULM2 529 aaPredicted RBP15.99■□□□□ 0.15
COL4A1-204ENST00000543140 CNOT6Q9ULM6 557 aaKnown RBP15.99■□□□□ 0.15
COL4A1-204ENST00000543140 USP22Q9UPT9 525 aa15.99■□□□□ 0.15
COL4A1-204ENST00000543140 CCL27Q9Y4X3 112 aa15.99■□□□□ 0.15
COL4A1-204ENST00000543140 OR2AG2A6NM03 316 aa15.99■□□□□ 0.15
COL4A1-204ENST00000543140 WASH3PC4AMC7 463 aa15.99■□□□□ 0.15
COL4A1-204ENST00000543140 ULK1O75385 1050 aa15.99■□□□□ 0.15
COL4A1-204ENST00000543140 CBSLP0DN79 551 aa15.99■□□□□ 0.15
COL4A1-204ENST00000543140 MTHFD1P11586 935 aaKnown RBP15.99■□□□□ 0.15
COL4A1-204ENST00000543140 HSD17B1P14061 328 aa15.99■□□□□ 0.15
COL4A1-204ENST00000543140 TIMP2P16035 220 aa15.99■□□□□ 0.15
COL4A1-204ENST00000543140 SYN1P17600 705 aa15.99■□□□□ 0.15
COL4A1-204ENST00000543140 CBSP35520 551 aa15.99■□□□□ 0.15
COL4A1-204ENST00000543140 MRPL19P49406 292 aaKnown RBP15.99■□□□□ 0.15
COL4A1-204ENST00000543140 DMC1Q14565 340 aa15.99■□□□□ 0.15
COL4A1-204ENST00000543140 CPSF6Q16630 551 aaKnown RBP eCLIP15.99■□□□□ 0.15
COL4A1-204ENST00000543140 MTX3Q5HYI7 312 aa15.99■□□□□ 0.15
COL4A1-204ENST00000543140 ZFAND4Q86XD8 727 aa15.99■□□□□ 0.15
COL4A1-204ENST00000543140 RIOK2Q9BVS4 552 aaKnown RBP15.99■□□□□ 0.15
COL4A1-204ENST00000543140 TMEM106CQ9BVX2 250 aa15.99■□□□□ 0.15
COL4A1-204ENST00000543140 RDH14Q9HBH5 336 aa15.99■□□□□ 0.15
COL4A1-204ENST00000543140 PCDHGB4Q9UN71 923 aa15.99■□□□□ 0.15
COL4A1-204ENST00000543140 MRPS23Q9Y3D9 190 aaKnown RBP15.99■□□□□ 0.15
COL4A1-204ENST00000543140 PCDHGB5Q9Y5G0 923 aa15.99■□□□□ 0.15
COL4A1-204ENST00000543140 RANBP2P49792 3224 aaKnown RBP15.98■□□□□ 0.15
COL4A1-204ENST00000543140 MAP3K13O43283 966 aa15.98■□□□□ 0.15
COL4A1-204ENST00000543140 NCK1P16333 377 aa15.98■□□□□ 0.15
COL4A1-204ENST00000543140 VIPR1P32241 457 aa15.98■□□□□ 0.15
COL4A1-204ENST00000543140 GSK3BP49841 420 aa15.98■□□□□ 0.15
COL4A1-204ENST00000543140 LIPEQ05469 1076 aa15.98■□□□□ 0.15
COL4A1-204ENST00000543140 MESP2Q0VG99 397 aa15.98■□□□□ 0.15
COL4A1-204ENST00000543140 DHCR24Q15392 516 aa15.98■□□□□ 0.15
COL4A1-204ENST00000543140 C6orf52Q5T4I8 152 aa15.98■□□□□ 0.15
COL4A1-204ENST00000543140 NANOGP8Q6NSW7 305 aa15.98■□□□□ 0.15
COL4A1-204ENST00000543140 C12orf76Q8N812 135 aaPredicted RBP15.98■□□□□ 0.15
COL4A1-204ENST00000543140 CATSPER1Q8NEC5 780 aa15.98■□□□□ 0.15
COL4A1-204ENST00000543140 TRIM54Q9BYV2 358 aa15.98■□□□□ 0.15
COL4A1-204ENST00000543140 ALG2Q9H553 416 aa15.98■□□□□ 0.15
COL4A1-204ENST00000543140 NANOGQ9H9S0 305 aa15.98■□□□□ 0.15
COL4A1-204ENST00000543140 AKAP10O43572 662 aa15.98■□□□□ 0.15
COL4A1-204ENST00000543140 XPAP23025 273 aaPredicted RBP15.98■□□□□ 0.15
COL4A1-204ENST00000543140 VIPR2P41587 438 aa15.98■□□□□ 0.15
COL4A1-204ENST00000543140 CDKL1Q00532 357 aa15.98■□□□□ 0.15
COL4A1-204ENST00000543140 GK3PQ14409 553 aa15.98■□□□□ 0.15
COL4A1-204ENST00000543140 ZDHHC20Q5W0Z9 365 aa15.98■□□□□ 0.15
COL4A1-204ENST00000543140 HMBOX1Q6NT76 420 aa15.98■□□□□ 0.15
COL4A1-204ENST00000543140 C12orf40Q86WS4 652 aa15.98■□□□□ 0.15
COL4A1-204ENST00000543140 UBTD2Q8WUN7 234 aa15.98■□□□□ 0.15
COL4A1-204ENST00000543140 PPM1MQ96MI6 270 aa15.98■□□□□ 0.15
COL4A1-204ENST00000543140 COQ10BQ9H8M1 238 aa15.98■□□□□ 0.15
COL4A1-204ENST00000543140 ACTR8Q9H981 624 aa15.98■□□□□ 0.15
COL4A1-204ENST00000543140 IL36AQ9UHA7 158 aa15.98■□□□□ 0.15
COL4A1-204ENST00000543140 AP4B1Q9Y6B7 739 aa15.98■□□□□ 0.15
COL4A1-204ENST00000543140 ARPC2O15144 300 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 RGS14O43566 566 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 TPST1O60507 370 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 CYP2A6P11509 494 aaPredicted RBP15.97■□□□□ 0.15
COL4A1-204ENST00000543140 EPORP19235 508 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 IRX1P78414 480 aaPredicted RBP15.97■□□□□ 0.15
COL4A1-204ENST00000543140 FOXM1Q08050 763 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 ELMO1Q92556 727 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 ZFYVE19Q96K21 471 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 CNBD2Q96M20 576 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 CIB1Q99828 191 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 KCTD14Q9BQ13 255 aaPredicted RBP15.97■□□□□ 0.15
COL4A1-204ENST00000543140 EFHD1Q9BUP0 239 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 NTMT1Q9BV86 223 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 PIDD1Q9HB75 910 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 PARVBQ9HBI1 364 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 SLC24A3Q9HC58 644 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 DUS2Q9NX74 493 aaKnown RBP15.97■□□□□ 0.15
COL4A1-204ENST00000543140 ITM2BQ9Y287 266 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 EME2A4GXA9 379 aaPredicted RBP15.97■□□□□ 0.15
COL4A1-204ENST00000543140 FADS2P1A8MWK0 482 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 UPK3BL1B0FP48 263 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 UPK3BL2E5RIL1 263 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 MANBAO00462 879 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 ANKRD28O15084 1053 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 SEC22BO75396 215 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 CYP17A1P05093 508 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 EBLN1P0CF75 366 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 DGKGP49619 791 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 IMPG1Q17R60 797 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 KIAA0907Q7Z7F0 614 aaPredicted RBP15.97■□□□□ 0.15
COL4A1-204ENST00000543140 RALGPS2Q86X27 583 aaPredicted RBP15.97■□□□□ 0.15
COL4A1-204ENST00000543140 RGL4Q8IZJ4 473 aa15.97■□□□□ 0.15
COL4A1-204ENST00000543140 ZNF557Q8N988 423 aaPredicted RBP15.97■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms