RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 CBSLP0DN79 551 aa17.26■□□□□ 0.35
CLSTN3-214ENST00000542663 ZFXP17010 805 aaPredicted RBP17.26■□□□□ 0.35
CLSTN3-214ENST00000542663 CBSP35520 551 aa17.26■□□□□ 0.35
CLSTN3-214ENST00000542663 HADHAP40939 763 aa17.26■□□□□ 0.35
CLSTN3-214ENST00000542663 GSE1Q14687 1217 aa17.26■□□□□ 0.35
CLSTN3-214ENST00000542663 SSPNQ14714 243 aa17.26■□□□□ 0.35
CLSTN3-214ENST00000542663 IQCB1Q15051 598 aa17.26■□□□□ 0.35
CLSTN3-214ENST00000542663 LLGL1Q15334 1064 aa17.26■□□□□ 0.35
CLSTN3-214ENST00000542663 LYPLAL1Q5VWZ2 237 aa17.26■□□□□ 0.35
CLSTN3-214ENST00000542663 Q6ZS92 163 aa17.26■□□□□ 0.35
CLSTN3-214ENST00000542663 CUZD1Q86UP6 607 aa17.26■□□□□ 0.35
CLSTN3-214ENST00000542663 CFAP206Q8IYR0 622 aa17.26■□□□□ 0.35
CLSTN3-214ENST00000542663 UBE2Q2Q8WVN8 375 aa17.26■□□□□ 0.35
CLSTN3-214ENST00000542663 LCN9Q8WX39 176 aa17.26■□□□□ 0.35
CLSTN3-214ENST00000542663 RNF25Q96BH1 459 aaPredicted RBP17.26■□□□□ 0.35
CLSTN3-214ENST00000542663 IP6K3Q96PC2 410 aa17.26■□□□□ 0.35
CLSTN3-214ENST00000542663 PADI2Q9Y2J8 665 aa17.26■□□□□ 0.35
CLSTN3-214ENST00000542663 PCDHGA10Q9Y5H3 936 aa17.26■□□□□ 0.35
CLSTN3-214ENST00000542663 CSMD2Q7Z408 3487 aa17.26■□□□□ 0.35
CLSTN3-214ENST00000542663 PDZD2O15018 2839 aa17.26■□□□□ 0.35
CLSTN3-214ENST00000542663 HCRTR1O43613 425 aa17.25■□□□□ 0.35
CLSTN3-214ENST00000542663 LDB2O43679 373 aa17.25■□□□□ 0.35
CLSTN3-214ENST00000542663 CNOT3O75175 753 aaKnown RBP17.25■□□□□ 0.35
CLSTN3-214ENST00000542663 KRT1P04264 644 aa17.25■□□□□ 0.35
CLSTN3-214ENST00000542663 GYPCP04921 128 aa17.25■□□□□ 0.35
CLSTN3-214ENST00000542663 PRF1P14222 555 aa17.25■□□□□ 0.35
CLSTN3-214ENST00000542663 PECAM1P16284 738 aaPredicted RBP17.25■□□□□ 0.35
CLSTN3-214ENST00000542663 AGXTP21549 392 aa17.25■□□□□ 0.35
CLSTN3-214ENST00000542663 FOXL2P58012 376 aa17.25■□□□□ 0.35
CLSTN3-214ENST00000542663 ELOAQ14241 798 aaKnown RBP17.25■□□□□ 0.35
CLSTN3-214ENST00000542663 CLEC1AQ8NC01 280 aa17.25■□□□□ 0.35
CLSTN3-214ENST00000542663 IPMKQ8NFU5 416 aa17.25■□□□□ 0.35
CLSTN3-214ENST00000542663 FER1L6-AS2Q96M78 137 aa17.25■□□□□ 0.35
CLSTN3-214ENST00000542663 FCRL5Q96RD9 977 aa17.25■□□□□ 0.35
CLSTN3-214ENST00000542663 SLC7A5P2Q9GIP4 190 aa17.25■□□□□ 0.35
CLSTN3-214ENST00000542663 FAM60AQ9NP50 221 aa17.25■□□□□ 0.35
CLSTN3-214ENST00000542663 CSAG2Q9Y5P2 127 aa17.25■□□□□ 0.35
CLSTN3-214ENST00000542663 HEBP2Q9Y5Z4 205 aa17.25■□□□□ 0.35
CLSTN3-214ENST00000542663 ARL5AQ9Y689 179 aa17.25■□□□□ 0.35
CLSTN3-214ENST00000542663 AGAP14A8MT82 685 aa17.24■□□□□ 0.35
CLSTN3-214ENST00000542663 STX7O15400 261 aaKnown RBP17.24■□□□□ 0.35
CLSTN3-214ENST00000542663 ALPPP05187 535 aa17.24■□□□□ 0.35
CLSTN3-214ENST00000542663 HBQ1P09105 142 aa17.24■□□□□ 0.35
CLSTN3-214ENST00000542663 GLRBP48167 497 aa17.24■□□□□ 0.35
CLSTN3-214ENST00000542663 PRLHRP49683 370 aa17.24■□□□□ 0.35
CLSTN3-214ENST00000542663 SOX8P57073 446 aa17.24■□□□□ 0.35
CLSTN3-214ENST00000542663 KRT33BQ14525 404 aa17.24■□□□□ 0.35
CLSTN3-214ENST00000542663 ZNF658BQ4V348 819 aaPredicted RBP17.24■□□□□ 0.35
CLSTN3-214ENST00000542663 MLIPQ5VWP3 458 aa17.24■□□□□ 0.35
CLSTN3-214ENST00000542663 MFSD7Q6UXD7 560 aa17.24■□□□□ 0.35
CLSTN3-214ENST00000542663 ADGRF3Q8IZF5 1079 aa17.24■□□□□ 0.35
CLSTN3-214ENST00000542663 SLC34A3Q8N130 599 aa17.24■□□□□ 0.35
CLSTN3-214ENST00000542663 ZNF567Q8N184 647 aa17.24■□□□□ 0.35
CLSTN3-214ENST00000542663 ST6GALNAC3Q8NDV1 305 aa17.24■□□□□ 0.35
CLSTN3-214ENST00000542663 OR52E1Q8NGJ3 308 aa17.24■□□□□ 0.35
CLSTN3-214ENST00000542663 SLC35G2Q8TBE7 412 aa17.24■□□□□ 0.35
CLSTN3-214ENST00000542663 HM13Q8TCT9 377 aa17.24■□□□□ 0.35
CLSTN3-214ENST00000542663 TFB1MQ8WVM0 346 aaKnown RBP17.24■□□□□ 0.35
CLSTN3-214ENST00000542663 CCM2Q9BSQ5 444 aa17.24■□□□□ 0.35
CLSTN3-214ENST00000542663 OR52A5Q9H2C5 316 aa17.24■□□□□ 0.35
CLSTN3-214ENST00000542663 TFB2MQ9H5Q4 396 aaKnown RBP17.24■□□□□ 0.35
CLSTN3-214ENST00000542663 ASB8Q9H765 288 aa17.24■□□□□ 0.35
CLSTN3-214ENST00000542663 P4HTMQ9NXG6 502 aa17.24■□□□□ 0.35
CLSTN3-214ENST00000542663 LUC7L2Q9Y383 392 aaKnown RBP17.24■□□□□ 0.35
CLSTN3-214ENST00000542663 PTRH2Q9Y3E5 179 aaKnown RBP17.24■□□□□ 0.35
CLSTN3-214ENST00000542663 FBN2P35556 2912 aa17.24■□□□□ 0.35
CLSTN3-214ENST00000542663 CNTRLQ7Z7A1 2325 aa17.23■□□□□ 0.35
CLSTN3-214ENST00000542663 SRP72O76094 671 aaKnown RBP17.23■□□□□ 0.35
CLSTN3-214ENST00000542663 TMEM253P0C7T8 217 aa17.23■□□□□ 0.35
CLSTN3-214ENST00000542663 PYGMP11217 842 aa17.23■□□□□ 0.35
CLSTN3-214ENST00000542663 ELAVL4P26378 380 aaKnown RBP17.23■□□□□ 0.35
CLSTN3-214ENST00000542663 GABRA4P48169 554 aa17.23■□□□□ 0.35
CLSTN3-214ENST00000542663 XIAPP98170 497 aa17.23■□□□□ 0.35
CLSTN3-214ENST00000542663 FANCCQ00597 558 aa17.23■□□□□ 0.35
CLSTN3-214ENST00000542663 MPP3Q13368 585 aa17.23■□□□□ 0.35
CLSTN3-214ENST00000542663 SLC18A3Q16572 532 aa17.23■□□□□ 0.35
CLSTN3-214ENST00000542663 ASTE1Q2TB18 679 aaPredicted RBP17.23■□□□□ 0.35
CLSTN3-214ENST00000542663 C1orf189Q5VU69 101 aa17.23■□□□□ 0.35
CLSTN3-214ENST00000542663 RHBDD2Q6NTF9 364 aa17.23■□□□□ 0.35
CLSTN3-214ENST00000542663 PPP1R32Q7Z5V6 425 aa17.23■□□□□ 0.35
CLSTN3-214ENST00000542663 KCNMB4Q86W47 210 aa17.23■□□□□ 0.35
CLSTN3-214ENST00000542663 OR4K2Q8NGD2 314 aa17.23■□□□□ 0.35
CLSTN3-214ENST00000542663 GBP5Q96PP8 586 aa17.23■□□□□ 0.35
CLSTN3-214ENST00000542663 FERD3LQ96RJ6 166 aa17.23■□□□□ 0.35
CLSTN3-214ENST00000542663 FKBPLQ9UIM3 349 aa17.23■□□□□ 0.35
CLSTN3-214ENST00000542663 CDYLQ9Y232 598 aa17.23■□□□□ 0.35
CLSTN3-214ENST00000542663 E2F3O00716 465 aa17.22■□□□□ 0.35
CLSTN3-214ENST00000542663 CTSBP07858 339 aa17.22■□□□□ 0.35
CLSTN3-214ENST00000542663 UMODP07911 640 aa17.22■□□□□ 0.35
CLSTN3-214ENST00000542663 FOLR3P41439 243 aa17.22■□□□□ 0.35
CLSTN3-214ENST00000542663 CDKN2BP42772 138 aa17.22■□□□□ 0.35
CLSTN3-214ENST00000542663 TNNT3P45378 269 aaPredicted RBP17.22■□□□□ 0.35
CLSTN3-214ENST00000542663 NR2C2P49116 596 aa17.22■□□□□ 0.35
CLSTN3-214ENST00000542663 TAZQ16635 292 aa17.22■□□□□ 0.35
CLSTN3-214ENST00000542663 DEFB110Q30KQ9 67 aa17.22■□□□□ 0.35
CLSTN3-214ENST00000542663 LRRC38Q5VT99 294 aa17.22■□□□□ 0.35
CLSTN3-214ENST00000542663 MRPL14Q6P1L8 145 aaKnown RBP17.22■□□□□ 0.35
CLSTN3-214ENST00000542663 GPR135Q8IZ08 494 aa17.22■□□□□ 0.35
CLSTN3-214ENST00000542663 ZADH2Q8N4Q0 377 aa17.22■□□□□ 0.35
CLSTN3-214ENST00000542663 PHC3Q8NDX5 983 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms